View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19957_low_2 (Length: 733)

Name: NF19957_low_2
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19957_low_2
NF19957_low_2
[»] chr6 (4 HSPs)
chr6 (15-717)||(24465122-24465822)
chr6 (390-424)||(8065656-8065690)
chr6 (433-490)||(19218462-19218519)
chr6 (84-144)||(18019477-18019537)
[»] chr4 (7 HSPs)
chr4 (84-144)||(9488142-9488202)
chr4 (84-144)||(30040137-30040197)
chr4 (84-144)||(4546657-4546717)
chr4 (84-144)||(26532206-26532266)
chr4 (84-144)||(28917423-28917483)
chr4 (84-143)||(9538554-9538613)
chr4 (433-492)||(19362441-19362500)
[»] chr8 (8 HSPs)
chr8 (84-144)||(18835940-18836000)
chr8 (432-500)||(20539608-20539676)
chr8 (84-144)||(8370901-8370961)
chr8 (84-144)||(25611789-25611849)
chr8 (84-144)||(26241079-26241139)
chr8 (433-504)||(2963148-2963219)
chr8 (433-492)||(18835381-18835440)
chr8 (84-145)||(21969926-21969987)
[»] chr7 (6 HSPs)
chr7 (84-144)||(47166507-47166567)
chr7 (447-591)||(3132786-3132931)
chr7 (84-144)||(8465593-8465653)
chr7 (84-144)||(18258771-18258831)
chr7 (433-504)||(19393636-19393707)
chr7 (433-492)||(24443539-24443598)
[»] chr5 (4 HSPs)
chr5 (433-500)||(20100455-20100522)
chr5 (84-144)||(20941621-20941681)
chr5 (84-144)||(22941845-22941905)
chr5 (84-144)||(25805033-25805093)
[»] chr2 (5 HSPs)
chr2 (365-434)||(40301073-40301142)
chr2 (84-144)||(24249681-24249741)
chr2 (84-144)||(24763319-24763379)
chr2 (433-500)||(28741238-28741305)
chr2 (473-527)||(24471605-24471659)
[»] scaffold0389 (1 HSPs)
scaffold0389 (84-144)||(756-816)
[»] scaffold0112 (1 HSPs)
scaffold0112 (84-144)||(777-837)
[»] chr3 (7 HSPs)
chr3 (84-144)||(15846184-15846244)
chr3 (539-591)||(16200237-16200289)
chr3 (539-591)||(16200543-16200595)
chr3 (84-144)||(21034832-21034892)
chr3 (84-144)||(21399386-21399446)
chr3 (435-492)||(14147052-14147109)
chr3 (84-145)||(25978375-25978436)
[»] chr1 (4 HSPs)
chr1 (84-144)||(19706087-19706147)
chr1 (84-144)||(28134371-28134431)
chr1 (84-144)||(47667133-47667193)
chr1 (86-144)||(22613086-22613144)
[»] scaffold0031 (1 HSPs)
scaffold0031 (433-492)||(40200-40259)
[»] scaffold0111 (1 HSPs)
scaffold0111 (84-142)||(27138-27196)


Alignment Details
Target: chr6 (Bit Score: 587; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 15 - 717
Target Start/End: Original strand, 24465122 - 24465822
Alignment:
Q  15 atatataagttttacttatttatttaaggtctcattcatttgtccttatgtgtgtgaccttgttggtaataatattataaacaatgggtagtatctagca 114  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24465122 atatataagttctacttatttatttaatgtctcattcatttgtccttatgtgtgtgaccttgttggtaataatattataaacaatgagtagtatctagca 24465221  T
Q  115 actcatcattgttatcctagtgacaagaataccatattatccttttacccttatgccattattgaacacacgggatagactatgtaatcattgtctagtt 214  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  24465222 actcatcactgttaccctagtgacaagaatgccatattatccttttactcttatgccattattgaacac-cagaatagactatgtaatcattgtctagtt 24465320  T
Q  215 caatatcccattcaccatgattcgtggattgcctatcaattggctttataatcatctttttacatacaatgtttgagaagacaacaaagcactataatcc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24465321 caatatcccattcaccatgattcgtggattgcctatcaattggctttataatcatctttttacatacaatgtttgagaagacaacaaagcactataatcc 24465420  T
Q  315 acatttaggaattattgtgatttcacgtcgaaggtggcaatacaactattactatgagaatatctcatgactctacataactcattatatagtattctca 414  Q
    |||||||||||| || ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24465421 acatttaggaatcatagtgatttcacgtcgaaggtagcaacaccactattactatgagaatatctcatgactctacataactcactatatagtattctca 24465520  T
Q  415 tggtgggtcaatttggtatactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcattagtaaattcacat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  24465521 tggtgggtcaatttggtatactcctaatattcatacttatgtgaagactttatatatcatattcatgacccatgagatatgatcattagtaaattcatat 24465620  T
Q  515 aacagtctctatgaattactattttcccatttcacattaaatcatgattacaaatactttaagaataatgtccttataactaatgatgaaacttgtaaac 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24465621 aacagtctctatgaattactattttcccatttcacattaaatcatgactacaaatactttaagaataatgtccttataattaatgatgaaacttgtaaac 24465720  T
Q  615 acactatcaaataacctaagatctttgaatcaaaacaatcaatatctacattaaaagacaaacannnnnnnnnggggcacaaaagacaaatagttttatt 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  24465721 acactatcaaataacctaagatctttgaatcaaaacaatcaatatctacattaaaagacaaaca-ttttttttggggcacaaaagacaaatagttttatt 24465819  T
Q  715 aaa 717  Q
    |||    
T  24465820 aaa 24465822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 8065656 - 8065690
Alignment:
Q  390 cataactcattatatagtattctcatggtgggtca 424  Q
    |||||||||||||||||||||||||||||||||||    
T  8065656 cataactcattatatagtattctcatggtgggtca 8065690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 19218519 - 19218462
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgag 490  Q
    ||||||||||||| |||| |||||  |||||| |||| ||||||||||||||||||||    
T  19218519 tactcctaatatttatacatatgtatagacttaatatctcatattcatgacccatgag 19218462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 18019477 - 18019537
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  18019477 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 18019537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 9488202 - 9488142
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| | ||||||||||||| |||||||| ||||| ||||||||||||    
T  9488202 taatattataaacaatgagcagtatctagcaacacatcattgctatccaagtgacaagaat 9488142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 30040137 - 30040197
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||| ||||||||||| || |||||||||||| |||||||| ||||| ||||||||||||    
T  30040137 taatactataaacaatgagtggtatctagcaacacatcattgctatccaagtgacaagaat 30040197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 4546717 - 4546657
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||| ||||||||||| |  |||||||||||| |||||||| ||||| ||||||||||||    
T  4546717 taatactataaacaatgagcggtatctagcaacacatcattgctatccaagtgacaagaat 4546657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 26532266 - 26532206
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  26532266 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 26532206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 28917423 - 28917483
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  28917423 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 28917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 9538613 - 9538554
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaa 143  Q
    ||||||||||||||||| |  ||||||||||||  |||| |||||||| |||||||||||    
T  9538613 taatattataaacaatgagcggtatctagcaacagatcactgttatccaagtgacaagaa 9538554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 19362500 - 19362441
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 492  Q
    ||||||||||||| |||| |||||  ||| || |||| ||||||||||||||||||||||    
T  19362500 tactcctaatattaatacctatgtatagatttaatatctcatattcatgacccatgagat 19362441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 18836000 - 18835940
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    |||||||||||||||||  |||||||||||||| |||||||| || || ||||||||||||    
T  18836000 taatattataaacaatgactagtatctagcaacacatcattgctacccaagtgacaagaat 18835940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 20539608 - 20539676
Alignment:
Q  432 atactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcat 500  Q
    |||||| ||||||| ||||||||||  | |||| |||| |||||||||||||||||||||| |||||||    
T  20539608 atactcttaatatttatacttatgtatacacttaatatctcatattcatgacccatgagatgtgatcat 20539676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 8370901 - 8370961
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  8370901 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 8370961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 25611849 - 25611789
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  25611849 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 25611789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 26241139 - 26241079
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  26241139 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 26241079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 2963148 - 2963219
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcattagt 504  Q
    ||||||||||||| |||| |||||  |||||| |||| ||||||| || |||||||||||| | ||||||||    
T  2963148 tactcctaatatttatacctatgtatagacttaatatctcatatttataacccatgagatacggtcattagt 2963219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 18835440 - 18835381
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 492  Q
    ||||||||||||| ||||||||||  |||||| |||| ||||||  ||||||||||||||    
T  18835440 tactcctaatatttatacttatgtatagacttaatatctcatatctatgacccatgagat 18835381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 21969987 - 21969926
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaata 145  Q
    |||||||||||||| || |  |||||||||||| || ||||| ||||| |||||||||||||    
T  21969987 taatattataaacattgagcggtatctagcaacacaccattgctatccaagtgacaagaata 21969926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 47166507 - 47166567
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| | ||||||||||||| |||||||| || || ||||||||||||    
T  47166507 taatattataaacaatgagcagtatctagcaacacatcattgctacccaagtgacaagaat 47166567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 591
Target Start/End: Complemental strand, 3132931 - 3132786
Alignment:
Q  447 atacttatgtgaagactttatatgtcatattca-tgacccatgagatatgatcattagtaaattcacataacagtctctatgaattactattttcccatt 545  Q
    |||| ||||||||||||| |||| ||||||||| | | | ||||||| ||||||| |||  | ||||||   |||||||||| ||||||||||| ||| |    
T  3132931 atacatatgtgaagacttgatatctcatattcatttatctatgagatgtgatcatcagtctaatcacattgtagtctctatgcattactatttttccaat 3132832  T
Q  546 tcacattaaatcatgattacaaatactttaagaataatgtccttat 591  Q
    ||  | |||| |  ||||||||||||||| | ||||||| ||||||    
T  3132831 tccaagtaaaactagattacaaatactttcataataatgaccttat 3132786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 8465653 - 8465593
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  8465653 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 8465593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 18258771 - 18258831
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||| ||||||||||| |  |||||||||||| ||||||||||| || ||||||||||||    
T  18258771 taatactataaacaatgagcggtatctagcaacacatcattgttacccaagtgacaagaat 18258831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 19393636 - 19393707
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcattagt 504  Q
    ||||||||||||| |||| |||||  |||||| |||| ||||||| ||||||||||| || || ||||||||    
T  19393636 tactcctaatatttatacctatgtatagacttaatatctcatatttatgacccatgaaatgtggtcattagt 19393707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Original strand, 24443539 - 24443598
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 492  Q
    |||||||||||||||||| |||||  | |||| |||| | ||||||||||||||||||||    
T  24443539 tactcctaatattcatacctatgtataaacttaatatcttatattcatgacccatgagat 24443598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 20100455 - 20100522
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcat 500  Q
    ||||||||||||| |||| ||| |  |||||| |||| |||||||||||||||||||||| |||||||    
T  20100455 tactcctaatattgatacctatctatagacttaatatctcatattcatgacccatgagatgtgatcat 20100522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 20941681 - 20941621
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  20941681 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 20941621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 22941905 - 22941845
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  22941905 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 22941845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 25805033 - 25805093
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  25805033 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 25805093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 40301073 - 40301142
Alignment:
Q  365 actatgagaatatctcatgactctacataactcattatatagtattctcatggtgggtcaatttggtata 434  Q
    ||||||||| ||||| ||||| || ||||||   |||| ||||||||||||||||||||||| |||||||    
T  40301073 actatgagactatcttatgacacttcataacatgttatgtagtattctcatggtgggtcaatctggtata 40301142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 24249681 - 24249741
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  24249681 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 24249741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 24763319 - 24763379
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||||||| | ||||||| ||||    
T  24763319 taatattataaacaatgagccgtatctagcaacacatcattgttattcaagtgacacgaat 24763379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 28741238 - 28741305
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcat 500  Q
    ||||||||||||| |||| |||||  | |||| |||| ||||||||||||| |||||||| |||||||    
T  28741238 tactcctaatatttatacctatgtacatacttaatatctcatattcatgacgcatgagatgtgatcat 28741305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 24471605 - 24471659
Alignment:
Q  473 atattcatgacccatgagatatgatcattagtaaattcacataacagtctctatg 527  Q
    |||||||||||||||||||| || |||||| || |||||||||| ||||| ||||    
T  24471605 atattcatgacccatgagatgtggtcattattatattcacataatagtctttatg 24471659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 816 - 756
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  816 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 837 - 777
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  837 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 15846184 - 15846244
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  15846184 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 15846244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 591
Target Start/End: Complemental strand, 16200289 - 16200237
Alignment:
Q  539 tcccatttcacattaaatcatgattacaaatactttaagaataatgtccttat 591  Q
    ||||| |||||| |||||| ||| ||| |||||||||||||||||||||||||    
T  16200289 tcccacttcacaataaatcttgactacgaatactttaagaataatgtccttat 16200237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 591
Target Start/End: Complemental strand, 16200595 - 16200543
Alignment:
Q  539 tcccatttcacattaaatcatgattacaaatactttaagaataatgtccttat 591  Q
    ||||| |||||| |||||| ||| ||| |||||||||||||||||||||||||    
T  16200595 tcccacttcacaataaatcttgactacgaatactttaagaataatgtccttat 16200543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 21034892 - 21034832
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  21034892 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 21034832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 21399446 - 21399386
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  21399446 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 21399386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 492
Target Start/End: Complemental strand, 14147109 - 14147052
Alignment:
Q  435 ctcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 492  Q
    ||||||||||| |||| |||||  |||||| |||| |||||| |||||||||||||||    
T  14147109 ctcctaatatttatacatatgtatagacttaatatctcatatccatgacccatgagat 14147052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 25978375 - 25978436
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaata 145  Q
    ||||| ||||||||||| |  |||||||||||| ||||||||| | || |||||||||||||    
T  25978375 taatactataaacaatgagcggtatctagcaacacatcattgtcacccaagtgacaagaata 25978436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 19706087 - 19706147
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  19706087 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 19706147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 28134371 - 28134431
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  28134371 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 28134431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 47667133 - 47667193
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  47667133 taatattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 47667193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 22613144 - 22613086
Alignment:
Q  86 atattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaagaat 144  Q
    ||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||||    
T  22613144 atattataaacaatgagcggtatctagcaacacatcattgctacccaagtgacaagaat 22613086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Original strand, 40200 - 40259
Alignment:
Q  433 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 492  Q
    ||||||||||||| |||| |||||  |||||| |||| |||||| |||||||||||||||    
T  40200 tactcctaatatttatacctatgtatagacttaatatctcatatccatgacccatgagat 40259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 27196 - 27138
Alignment:
Q  84 taatattataaacaatgggtagtatctagcaactcatcattgttatcctagtgacaaga 142  Q
    ||||||||||||||||| |  |||||||||||| |||||||| || || ||||||||||    
T  27196 taatattataaacaatgagaggtatctagcaacacatcattgctaaccaagtgacaaga 27138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University