View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19957_low_6 (Length: 507)

Name: NF19957_low_6
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19957_low_6
NF19957_low_6
[»] chr6 (5 HSPs)
chr6 (18-435)||(10082304-10082721)
chr6 (25-377)||(10098126-10098483)
chr6 (383-435)||(4443557-4443609)
chr6 (383-435)||(13512507-13512559)
chr6 (383-435)||(28694668-28694720)
[»] chr2 (3 HSPs)
chr2 (383-435)||(37364042-37364094)
chr2 (383-435)||(35600593-35600645)
chr2 (383-435)||(40656395-40656447)
[»] chr8 (1 HSPs)
chr8 (383-435)||(9764365-9764417)
[»] chr7 (2 HSPs)
chr7 (383-435)||(18334467-18334519)
chr7 (383-435)||(38702785-38702837)
[»] chr5 (2 HSPs)
chr5 (383-435)||(33886969-33887021)
chr5 (383-435)||(37567382-37567434)
[»] chr4 (1 HSPs)
chr4 (383-435)||(38965881-38965933)
[»] chr1 (1 HSPs)
chr1 (383-435)||(34676542-34676594)
[»] chr3 (1 HSPs)
chr3 (383-434)||(26249337-26249388)


Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 10082721 - 10082304
Alignment:
Q  18 agataatagcctcaaatttgtcaagtcgtgatattttgctctaatggaattttcaacataaacatgagatctacggaaataannnnnnnatcactctaga 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||       |||||| ||||    
T  10082721 agataatagcctcaaatttgtcaagtcgtgatattgtgctctaatggaattttcaacataaacatgagatctaccgaaataatttttttatcactataga 10082622  T
Q  118 ccatttgtatggtggtacgatacttagcaaaccttaaaagcactgcaacatatggtgtatgtgttgcagcttgtgtcctaccttggtgctattcaatgtg 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10082621 ccatttgtatggtggtacaatacttagcaaaccttaaaagcactgcaacatatggtgcatgtgttgcagcttgtgtcctaccttggtgctattcaatgtg 10082522  T
Q  218 ggatgttggttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatcattgagagtgttagtgttattctggtgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  10082521 ggatgttggttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatcattgagagtgttactgttaatttggtgattc 10082422  T
Q  318 tcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaactgaacaaggtgttgggcagcagagtggaagccgacaaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  10082421 tcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaattgaacaaggtgttgggcagcggagtggaagccgacaaaa 10082322  T
Q  418 tgtgagggatcttccagt 435  Q
    |||||||| || ||||||    
T  10082321 tgtgagggctcctccagt 10082304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 25 - 377
Target Start/End: Complemental strand, 10098483 - 10098126
Alignment:
Q  25 agcctcaaatttgtcaagtcgtgatattttgctctaatggaattttcaacataaacatgagatctacggaaataannnnnnnatcactctagaccatttg 124  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||  ||||||        | |||||||||| ||||    
T  10098483 agcctcaaatttgtcaaatcgtgatattttactctaatgaaattttcaacataaacatgagatctactaaaataaatgtt---ttactctagaccctttg 10098387  T
Q  125 tatggtggtacgatacttagcaaaccttaaaagcactgcaacatatggtgtatgtgttgcagcttgtgtcctaccttggtgctattcaatgtgggatgtt 224  Q
    ||||||||| | |||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  10098386 tatggtggttcaatacttagcagaccataaaagcactgcaac-tatggtgtacgtgttgcagcttgtgtcctaccttggtgctattcatggtgggatgtt 10098288  T
Q  225 ggttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatc---------attgagagtgttagtgttattctggtgat 315  Q
    ||||||||  |   ||| || || |||||| |||||||||||| | ||| ||||||||||||         ||||||||||||||||||||| ||||| |    
T  10098287 ggttgcaatgcccccatcataggggtggtgttattaatttgtattgagatttgtgtgccatcattgagatgattgagagtgttagtgttattttggtgtt 10098188  T
Q  316 tctcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaa 377  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  10098187 tctcatgtctataattattatatctacagaagtaccatggaattattaatttaaaaggtcaa 10098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 4443609 - 4443557
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  4443609 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 4443557  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 13512507 - 13512559
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  13512507 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 13512559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 28694668 - 28694720
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  28694668 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 28694720  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 37364094 - 37364042
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  37364094 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggctcctccagt 37364042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 35600593 - 35600645
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  35600593 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 35600645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 40656395 - 40656447
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  40656395 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 40656447  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 9764365 - 9764417
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| || ||||||    
T  9764365 caaggtgttgggcagcatagtagaagccgacaaaatgtgagggctcctccagt 9764417  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 18334519 - 18334467
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  18334519 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 18334467  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 38702837 - 38702785
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  38702837 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 38702785  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 33887021 - 33886969
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  33887021 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 33886969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 37567434 - 37567382
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  37567434 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 37567382  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 38965933 - 38965881
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  38965933 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 38965881  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 34676594 - 34676542
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 435  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  34676594 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 34676542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 26249337 - 26249388
Alignment:
Q  383 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccag 434  Q
    |||||||||||||||||||||||||||||| | | |||||||| || |||||    
T  26249337 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccag 26249388  T

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