View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19957_low_8 (Length: 410)
Name: NF19957_low_8
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19957_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 40538776 - 40539146
Alignment:
| Q |
15 |
aatatgagccgtctaatctttcgtccattagctcggattgctagctgcctgttttttagctacatcaaattcaagatcaaatttattgacttgctatgat |
114 |
Q |
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| T |
40538776 |
aatatgagccgtctaatctttcgtccattagctccgattgctagctgcctgttttttagctacatca------------aatttattgacttgctatgat |
40538863 |
T |
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| Q |
115 |
attgtggtatctcaggatggtagaattaactatgaagaattttgtacaatgatgaggagtggagtggagtggagtccaacaacaagacaagatatctaat |
214 |
Q |
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| T |
40538864 |
attgtggtatctcaggatggtagaattaactatgaagaattttgtacaatgatgaggagtgaagtggagtggagtccaacaacaagacaagatatctaat |
40538963 |
T |
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| Q |
215 |
ctaaataaaccacacaattatgtcactagttttatacatcatatgatagacatgtaaagattttaatatagatttgtagtagtgaaaagttaaaatgctc |
314 |
Q |
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| T |
40538964 |
ctaaataaaccacacaattatgtcactagttttatacatcatgtgatagacatgtaaagattttaatatagatttgtagtagtgaaaagttaaaatgctc |
40539063 |
T |
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| Q |
315 |
tgcttgagtggttatcttatctactctctta--tctctttttggtttctttaaagtctagttttgagtgatcttgtaatttat |
395 |
Q |
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| T |
40539064 |
tgcttgagtggttatcttatctactctcttatttctctttttggtttctttaaagtctagttttgagtgatcttgtaatttat |
40539146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 40535291 - 40535457
Alignment:
| Q |
15 |
aatatgagccgtctaatctttcgtccattagctcggattgctagctgc-ctgttttttagctacatcaaattcaagatc-aaatttattgacttgctatg |
112 |
Q |
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| T |
40535291 |
aatatgagccgtctaatctttcatccattagctccgattgctagctgcacaattttttagctacatcaaatccaagatcggtttttaatgacttgctatg |
40535390 |
T |
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| Q |
113 |
atattgtggtatctcaggatggtagaattaactatgaagaattttgtacaatgatgaggagtggagt |
179 |
Q |
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| T |
40535391 |
atgttgtggtatctcaggatggtagaattaactatgaagaattttgtacaatgatgaggagtggagt |
40535457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 40535593 - 40535675
Alignment:
| Q |
252 |
atcatatgatagacatgtaaagattttaatatagatttgtagtagtgaaaagttaaaatgctctgcttgagtggttatcttat |
334 |
Q |
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| T |
40535593 |
atcatatgataagcatgtaaagattctaatatacatttgtggtagtgaaaaattaaaatgctctgcttgagtggttgtcttat |
40535675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 20505830 - 20505880
Alignment:
| Q |
127 |
caggatggtagaattaactatgaagaattttgtacaatgatgaggagtgga |
177 |
Q |
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| T |
20505830 |
caggatggtagaatcaactatgaagaattctgtgcaatgatgagaagtgga |
20505880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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