View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19957_low_9 (Length: 381)
Name: NF19957_low_9
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19957_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 33615801 - 33616145
Alignment:
| Q |
18 |
actctcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcaggnnnnnnncttcttctgcgtttattc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33615801 |
actctcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcaggttttttttttcttctgcgtttattc |
33615900 |
T |
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| Q |
118 |
cataaatttttcagtctatctatcaaatttaaaagattatttatatctaatttcacannnnnnnnnncttttcaatttattaaatttcaggaggtgttac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33615901 |
cataaatttttcagtctatctatcaaatttaaaagattatttatatctaatttcacatattttttt--ttttcaatttattaaatttcaggaggtgttac |
33615998 |
T |
|
| Q |
218 |
aacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtatgatagtcaaatattg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33615999 |
aacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtatgatagtcaaatattg |
33616098 |
T |
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| Q |
318 |
acactatttacgtcttctctttatctagctggattagtgtcatccat |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33616099 |
acactatttacgtcttctctttatctagctggattagtgtcatccat |
33616145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 33608199 - 33608359
Alignment:
| Q |
202 |
tttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgta |
301 |
Q |
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| T |
33608199 |
tttcaggaggtgtcacaacgatggtgccgtttcttcaaaaattctttccagatattctaaggaaggcagctggtgctgaagtgaatatgtattgtgtgta |
33608298 |
T |
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| Q |
302 |
tgatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatcc |
362 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33608299 |
tgatagtcaaacattgacattatttacgtcttctctttatctagctggattagtgtcatcc |
33608359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 33626477 - 33626630
Alignment:
| Q |
199 |
aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgt |
298 |
Q |
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|||||||||||||||| ||||| ||| ||||||||| |||||||||| ||||||||||| |||||||||| || | | ||||| ||||| ||||| |
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| T |
33626477 |
aaatttcaggaggtgtcacaactatgaagccatttcttaaaaaattcttcccagacattctaagaaaggcagttggtactaaggtgaacatgtactgtgt |
33626576 |
T |
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| Q |
299 |
gtatgatagtcaaatattgacactatttacgtcttctctttatctagctggatt |
352 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
33626577 |
gtatgatagtcaaatattgacattattcacgtcttctctttatctagctggatt |
33626630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 359
Target Start/End: Original strand, 33587423 - 33587579
Alignment:
| Q |
203 |
ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat |
302 |
Q |
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|||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || | ||||| |||||||| ||||||||| |
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| T |
33587423 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33587522 |
T |
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| Q |
303 |
gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtca |
359 |
Q |
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|| ||||| || ||||| | |||||||| ||||| ||||||||||| ||||||||| |
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| T |
33587523 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtca |
33587579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 359
Target Start/End: Original strand, 33594595 - 33594751
Alignment:
| Q |
203 |
ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat |
302 |
Q |
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|
|||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || | ||||| |||||||| ||||||||| |
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| T |
33594595 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33594694 |
T |
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| Q |
303 |
gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtca |
359 |
Q |
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|| ||||| || ||||| | |||||||| ||||| ||||||||||| ||||||||| |
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| T |
33594695 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtca |
33594751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 359
Target Start/End: Original strand, 33601726 - 33601882
Alignment:
| Q |
203 |
ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat |
302 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || | ||||| |||||||| ||||||||| |
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| T |
33601726 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33601825 |
T |
|
| Q |
303 |
gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtca |
359 |
Q |
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|| ||||| || ||||| | |||||||| ||||| ||||||||||| ||||||||| |
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| T |
33601826 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtca |
33601882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 358
Target Start/End: Original strand, 33621356 - 33621515
Alignment:
| Q |
199 |
aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgt |
298 |
Q |
| |
|
||||||||| |||||| || || ||| ||||||||| ||||||| || ||| ||||||| ||||| ||||| || | | ||||| ||||||||||| |
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| T |
33621356 |
aaatttcagaaggtgtcaccaccatgaagccatttcttaaaaaattattcccatacattcttagaaatgcagctggtactaaggtgaacatgtattgtgt |
33621455 |
T |
|
| Q |
299 |
gtatgatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtc |
358 |
Q |
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|||||||||||||||||||||| |||| || ||||| ||||||||||||||||| ||||| |
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| T |
33621456 |
gtatgatagtcaaatattgacattattcacatcttcactttatctagctggatttgtgtc |
33621515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 33626302 - 33626370
Alignment:
| Q |
24 |
aatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcagg |
92 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||||||| |
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| T |
33626302 |
aatcatcattacctgcatagttgctgcttccagtggccttctttttggatatgacatcggaatttcagg |
33626370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 33562047 - 33562111
Alignment:
| Q |
291 |
tattgtgtgtatgatagtcaaatattgacactatttacgtcttctctttatctagctggattagt |
355 |
Q |
| |
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||||||||||||||||||||||| || ||| |||| ||||| || || ||||||||||| ||||| |
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| T |
33562047 |
tattgtgtgtatgatagtcaaatgttaacattattcacgtcctcactgtatctagctgggttagt |
33562111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 33561955 - 33562006
Alignment:
| Q |
199 |
aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttcc |
250 |
Q |
| |
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||||||||||||||||||| |||||| ||||||| || ||||||||||||| |
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| T |
33561955 |
aaatttcaggaggtgttactacgatgatgccattccttgaaaaattctttcc |
33562006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 33608006 - 33608061
Alignment:
| Q |
22 |
tcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatga |
77 |
Q |
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|||||||||||||| ||||| |||||||| ||| |||| ||||||| ||||||||| |
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| T |
33608006 |
tcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatga |
33608061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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