View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_high_10 (Length: 365)
Name: NF19958_high_10
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 30917858 - 30917991
Alignment:
| Q |
102 |
tcatgaaaaaatggtttttcacatatataatccaagccaacactgttatagttttcttaagatgtaaagcaaggtacaaatttaaattaaataaaatcaa |
201 |
Q |
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| T |
30917858 |
tcatgaaaaaatggttttcaacatgtataatgcaagccaacactgttatagttttcttaagatgcaaagcaaggtacaaatttaaattaaataaaatcaa |
30917957 |
T |
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| Q |
202 |
ttaaaatatagagtttatttccaaaccattaatt |
235 |
Q |
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| T |
30917958 |
ttaaaatatagagtttatttccaaacctttaatt |
30917991 |
T |
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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 30918050 - 30918107
Alignment:
| Q |
234 |
ttgctagtgatttttgacacaacattagctcagaactctattcatgaatataacatatatc |
294 |
Q |
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| T |
30918050 |
ttgctagtgattt---acacaacattagctcacaactctatccatgaatataacatatatc |
30918107 |
T |
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