View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_high_13 (Length: 319)
Name: NF19958_high_13
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 38 - 301
Target Start/End: Original strand, 53672979 - 53673242
Alignment:
| Q |
38 |
cactgaagtttagatgctacattgatatcatggatgaaatgaaaggcgtatttacccataggagaatgttttgctttgatgaatcaacaggtcttcttcc |
137 |
Q |
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| T |
53672979 |
cactgaagtttagatgctacattgatatcatggatgaaatgaaaggcatatttacccataggagaatgttttgctttgatgaatcaacaggtcttcttcc |
53673078 |
T |
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| Q |
138 |
agttacaatctcaagaagaagaacaccaaatgcaaaaatatcagttttctcatccacaataccatgcataaagacctctggtgctaaatatccaaatgtt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673079 |
agttacaatctcaagaagaagaacaccaaatgcaaatatatcagttttctcatccacaataccatgcataaagacctctggtgctaaatatccaaatgtt |
53673178 |
T |
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| Q |
238 |
ccctcaactgggattacagcatggtgagtccatttgttaggaagccactttgctagtccaaaat |
301 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673179 |
ccctcaacagggattacagcatggtgagtccatttgttaggaagccactttgctagtccaaaat |
53673242 |
T |
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