View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19958_high_18 (Length: 293)
Name: NF19958_high_18
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 106 - 279
Target Start/End: Complemental strand, 2032495 - 2032322
Alignment:
| Q |
106 |
acatatattacaaaaggataaaccactattaaccctaaagtataagcaaataaccgagggtccaacactttaacggtttaactcaaaacctatccaaaac |
205 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2032495 |
acatgtattacaaaacgataaaccactattaacactaaagtataagcaaataaccgagggtccaacactttgacggtttaactcaaaacctatccaaaac |
2032396 |
T |
|
| Q |
206 |
aaaacactttttcacgaaatttgattttcaatacataatcctaccgatcattgactctattaacaacatttttg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2032395 |
aaaacactttttcacgaaatttgattttcaatacataatcctaccgatcattgactctattaacaacatttttg |
2032322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 2004620 - 2004564
Alignment:
| Q |
221 |
gaaatttgattttcaatacataatcctaccgatcattgactctattaacaacatttt |
277 |
Q |
| |
|
||||||||||||| |||| | |||||||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
2004620 |
gaaatttgatttttaatatacaatcctaccgttcattaactttatcaacaacatttt |
2004564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 32908350 - 32908288
Alignment:
| Q |
214 |
ttttcacgaaatttgattttcaatacataatcctaccgatcattgactctattaacaacattt |
276 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| |||||||||||| |||| ||||| |
|
|
| T |
32908350 |
ttttcacgaaatttaattttcaatacacaatcctaccatccattgactctatcaacatcattt |
32908288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University