View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_high_20 (Length: 263)
Name: NF19958_high_20
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 45126025 - 45126258
Alignment:
| Q |
13 |
aacacaaaagttaccctccacaaggttatatatatgttaccctagctagcctttaattaactactttgaatctttaattaattacctaaactgtatatgt |
112 |
Q |
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| T |
45126025 |
aacacaaaagttaccctccacaaggttatatatatgttaccctagctagcctttaattaactactttgaatctttaattaattacctaaactatatatgt |
45126124 |
T |
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| Q |
113 |
ttttgtttcagtactggcgctctnnnnnnntgtttatgtttcctgagacgtccattcctggtgatgcctacaattggaattgtttcagctatggagctta |
212 |
Q |
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| T |
45126125 |
ttttgtttcagtactggcgctctaaaaaaatgtttatgtttcctgagacgtccattcctggtgatgcctacaattggaattgtttcagctatggagctta |
45126224 |
T |
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| Q |
213 |
tttttgcaatcatgtttgttgcacttttgatatg |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45126225 |
tttttgcaatcatgtttgttgcacttttgatatg |
45126258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 45109170 - 45109273
Alignment:
| Q |
143 |
tgtttatgtttcctgagacgtccattcctggtgatgcctacaattggaattgtttcagctatggagcttatttttgcaatcatgtttgttgcacttttga |
242 |
Q |
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|||||| | ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||| |
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| T |
45109170 |
tgtttaggcttcctgagacgtccattcctggttatgtctccaattggaattgtttcagctatggagcttatttttgtactcatgtttgctgcactcttga |
45109269 |
T |
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| Q |
243 |
tatg |
246 |
Q |
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|||| |
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| T |
45109270 |
tatg |
45109273 |
T |
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