View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19958_high_23 (Length: 251)

Name: NF19958_high_23
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19958_high_23
NF19958_high_23
[»] chr3 (4 HSPs)
chr3 (135-232)||(39712278-39712378)
chr3 (19-93)||(39712162-39712236)
chr3 (151-232)||(11527907-11527988)
chr3 (21-89)||(11527786-11527854)
[»] chr2 (8 HSPs)
chr2 (139-221)||(44905040-44905122)
chr2 (139-221)||(28166196-28166278)
chr2 (135-232)||(37952878-37952975)
chr2 (21-89)||(37953012-37953080)
chr2 (28-76)||(37896385-37896433)
chr2 (144-204)||(37958644-37958704)
chr2 (25-76)||(37958769-37958820)
chr2 (144-232)||(37896498-37896586)
[»] chr1 (2 HSPs)
chr1 (139-221)||(40768147-40768229)
chr1 (139-221)||(13228709-13228791)
[»] chr7 (1 HSPs)
chr7 (139-221)||(38757177-38757259)
[»] chr4 (2 HSPs)
chr4 (139-221)||(34538660-34538742)
chr4 (151-220)||(11149455-11149524)
[»] chr5 (1 HSPs)
chr5 (139-214)||(6535356-6535431)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 39712278 - 39712378
Alignment:
Q  135 atgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttc---attatcatttttcttc 231  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||    
T  39712278 atgcattgcttcaaccatactagcccaaacaaaagcagaagttacaacaaatttagatataaattttggcacgttgatttcattattatcatttttcttc 39712377  T
Q  232 c 232  Q
    |    
T  39712378 c 39712378  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 39712162 - 39712236
Alignment:
Q  19 acacagttcccaaaatacccctctggtattgagtacccaagtctatctctgcaatcacatgtgaaacaaaagtac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712162 acacagttcccaaaatacccctctggtattgagtacccaagtctatctctgcaatcacatgtgaaacaaaagtac 39712236  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 11527907 - 11527988
Alignment:
Q  151 atactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttcc 232  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  11527907 atactagcccaaacgaaagcacaagttacaacaaatttagatagaaattgtggcgcgttgatttcgttatcatttttcttcc 11527988  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 11527786 - 11527854
Alignment:
Q  21 acagttcccaaaatacccctctggtattgagtacccaagtctatctctgcaatcacatgtgaaacaaaa 89  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||    
T  11527786 acagttcccaaaatacccctctggtattggataaccaagtctatctctgcaatcacatgtgaaagaaaa 11527854  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 44905040 - 44905122
Alignment:
Q  139 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc 221  Q
    ||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||||||| |||||    
T  44905040 attgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatc 44905122  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 28166196 - 28166278
Alignment:
Q  139 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc 221  Q
    ||||||||||| ||||||| |||||| |||||| ||||||| |||||||||| |||||||| ||||||||||||||| |||||    
T  28166196 attgctttaactatactagaccaaacgaaagcacaagttacgacaaatttagttagaaattgtggcacgttgatttctttatc 28166278  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 37952975 - 37952878
Alignment:
Q  135 atgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttcc 232  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |||  | | |||||| | ||| ||||||||||    
T  37952975 atgcattgctttaaccaaactaacccaaacaaaagcacaagttacaacatatttagatagaaattgtggtgcttggatttcttgatcttttttcttcc 37952878  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 37953080 - 37953012
Alignment:
Q  21 acagttcccaaaatacccctctggtattgagtacccaagtctatctctgcaatcacatgtgaaacaaaa 89  Q
    |||||| || ||||||||||| ||||||| |||||| ||||| ||||||||||||| ||||||||||||    
T  37953080 acagtttccgaaatacccctccggtattgtgtaccctagtctgtctctgcaatcacctgtgaaacaaaa 37953012  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 37896385 - 37896433
Alignment:
Q  28 ccaaaatacccctctggtattgagtacccaagtctatctctgcaatcac 76  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||    
T  37896385 ccaaaatacccctctggtattttgtacccaagtctatctctacaatcac 37896433  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 37958704 - 37958644
Alignment:
Q  144 tttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggc 204  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||| ||||| ||||    
T  37958704 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggc 37958644  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 37958820 - 37958769
Alignment:
Q  25 ttcccaaaatacccctctggtattgagtacccaagtctatctctgcaatcac 76  Q
    ||||||||||||||||||||||||  |||||||||||| ||||| |||||||    
T  37958820 ttcccaaaatacccctctggtattttgtacccaagtctttctctacaatcac 37958769  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 37896498 - 37896586
Alignment:
Q  144 tttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttcc 232  Q
    |||||||| ||||| |||||  ||| || |||||||||||||||||||||  |||| |||| | |  | ||||| ||||||||||||||    
T  37896498 tttaaccaaactagaccaaatgaaaccacaagttacaacaaatttagataacaattgtggcgcttgaacttcatgatcatttttcttcc 37896586  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 40768147 - 40768229
Alignment:
Q  139 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc 221  Q
    ||||||||||| |||||||||||||| ||| || ||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  40768147 attgctttaactatactagcccaaacgaaatcacaagttacgacaaatttagatagaaattgtggcacgttgatttccttatc 40768229  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 13228791 - 13228709
Alignment:
Q  139 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc 221  Q
    ||||||||||  |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||||||| |||||    
T  13228791 attgctttaaatatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatc 13228709  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 38757177 - 38757259
Alignment:
Q  139 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc 221  Q
    ||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| | || |||||||||| |||||    
T  38757177 attgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgttgcgcgttgatttccttatc 38757259  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 34538660 - 34538742
Alignment:
Q  139 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc 221  Q
    ||||||||||| |||||||||||||| |||||| ||||||  ||||||||| ||||||||| |||| |||||||||| |||||    
T  34538660 attgctttaactatactagcccaaacgaaagcataagttatgacaaatttacatagaaattgtggcgcgttgatttccttatc 34538742  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 11149524 - 11149455
Alignment:
Q  151 atactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattat 220  Q
    |||||| ||||| | |||||| ||||||| ||||| | ||||||||||| ||||||||||||||| ||||    
T  11149524 atactaacccaagcgaaagcacaagttacgacaaaatgagatagaaattgtggcacgttgatttccttat 11149455  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 6535356 - 6535431
Alignment:
Q  139 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgattt 214  Q
    ||||||||||| |||||||| ||||| |||||| || ||||  |||||||||||||||||| |||| |||||||||    
T  6535356 attgctttaactatactagctcaaacgaaagcacaaattacggcaaatttagatagaaattgtggcgcgttgattt 6535431  T

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