View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_high_24 (Length: 250)
Name: NF19958_high_24
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 7132637 - 7132872
Alignment:
| Q |
8 |
ccaccacctccaacagatttggccacagttgttcaaagccaccaaatatagataggtatgagctctaatgacaatggccggttgttcctcttgtggcaat |
107 |
Q |
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| T |
7132637 |
ccaccacctccaacagatttggccacagttgttcaaagccacaaaatatagataggtatgagctctaatgacaacggccggttgttcctcttgtggcaat |
7132736 |
T |
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| Q |
108 |
ctatttttaagtttagtttggagtagtgtactcatggtatttaattaaaagcttaaggataggtgttgaatattttggaacaatatattgtcttcagagc |
207 |
Q |
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| T |
7132737 |
ctatttttaagtttagtttggagtagtgtactcatggtatttaattaaaagcttaaggataggtgttgaatattttggaacaatatattgtcttcagagc |
7132836 |
T |
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| Q |
208 |
caaatgtgactgccaccattattggcatattcttcg |
243 |
Q |
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| T |
7132837 |
caaatgtgactgccaccattattagcattttcttcg |
7132872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 7136645 - 7136813
Alignment:
| Q |
64 |
tatgagctctaatgacaatggccggttgttcctcttgtggcaatctatttttaagtttagtttggagtagtgtactcatggtatttaattaaaagcttaa |
163 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | | |||| ||||||||||||| |||| ||| | |
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| T |
7136645 |
tatgagctctaatgacaatggcgcgttgttcctcttgcggcaatctatttttaagtttaggt---aatagt-----catggtatttaatcaaaaacttta |
7136736 |
T |
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| Q |
164 |
ggataggtgttgaatattttggaacaatatattgtcttcagagccaaatgtgactgccaccattattggcatattcttc |
242 |
Q |
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| T |
7136737 |
gcagagtta--gaatattttggaacaacatattgtcttcagagccaaatgtgactgccaccattattggcattttcttc |
7136813 |
T |
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