View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_high_28 (Length: 226)
Name: NF19958_high_28
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 22890623 - 22890764
Alignment:
| Q |
16 |
cagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22890623 |
cagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaa |
22890722 |
T |
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| Q |
116 |
tcagaggaactacaataagaaaattaaggttaattttgtctt |
157 |
Q |
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| T |
22890723 |
tcagaggaactacaataagaaaattaaggttaattttgtctt |
22890764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 22942287 - 22942428
Alignment:
| Q |
16 |
cagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22942287 |
cagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaa |
22942386 |
T |
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| Q |
116 |
tcagaggaactacaataagaaaattaaggttaattttgtctt |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
22942387 |
tcagaggaactacaataagaaaattaaggttaattttgtctt |
22942428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 41011858 - 41011940
Alignment:
| Q |
66 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
148 |
Q |
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| T |
41011858 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
41011940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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