View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19958_high_29 (Length: 213)

Name: NF19958_high_29
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19958_high_29
NF19958_high_29
[»] chr3 (2 HSPs)
chr3 (18-206)||(39712362-39712550)
chr3 (60-213)||(11527965-11528119)
[»] chr4 (2 HSPs)
chr4 (60-201)||(11149307-11149448)
chr4 (60-174)||(34538774-34538888)
[»] chr2 (5 HSPs)
chr2 (60-201)||(28166284-28166425)
chr2 (60-201)||(44905128-44905270)
chr2 (112-212)||(37952800-37952900)
chr2 (134-209)||(37896567-37896642)
chr2 (134-203)||(37958560-37958629)
[»] chr1 (2 HSPs)
chr1 (59-201)||(13228561-13228703)
chr1 (60-201)||(40768235-40768376)
[»] chr7 (1 HSPs)
chr7 (60-201)||(38757265-38757406)
[»] chr5 (1 HSPs)
chr5 (131-201)||(6535444-6535513)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 39712550 - 39712362
Alignment:
Q  18 agaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaag 117  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712550 agaggacttgaggatcttattttaagagattatttttttacaagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaag 39712451  T
Q  118 attcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39712450 attcttttaaggtaattattgcttttggaaaagaagaaattgaggggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataat 39712362  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 11528119 - 11527965
Alignment:
Q  60 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 159  Q
    |||||||||||||||  ||||||||||||| ||||||||||||  | ||||||| |||||| | |||||| |||||||| ||||||||||||||||||||    
T  11528119 agaaaatcatggaagcatagactcattgctgaaagtcaaagcaaggaagaacatcaagattttgttaaggcaattattgtttttggaaaagaagaaattg 11528020  T
Q  160 aagggatgaa-aaaatgggtgctgaatcaatggaagaaaaatgataatgaaatca 213  Q
    |  ||||||| |||||  ||||||||||||||||||||||||||||| |||||||    
T  11528019 agaggatgaaaaaaatatgtgctgaatcaatggaagaaaaatgataacgaaatca 11527965  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 11149307 - 11149448
Alignment:
Q  60 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 159  Q
    |||||||||||||||  ||||||||||||| ||| | ||| |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||    
T  11149307 agaaaatcatggaagaatagactcattgctgaaactgaaatcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattg 11149406  T
Q  160 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg 201  Q
    | |||||||||||||  |||||||||||||||||||||||||    
T  11149407 aggggatgaaaaaatatgtgctgaatcaatggaagaaaaatg 11149448  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 34538888 - 34538774
Alignment:
Q  60 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 159  Q
    |||||||||||||||  |||||||||| || ||| ||||| |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||    
T  34538888 agaaaatcatggaagcctagactcattactgaaactcaaatcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattg 34538789  T
Q  160 aagggatgaaaaaat 174  Q
    | |||||||||||||    
T  34538788 aggggatgaaaaaat 34538774  T

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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 28166425 - 28166284
Alignment:
Q  60 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 159  Q
    |||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||||||| | |||| | |||||||| ||||||||||||||||||||    
T  28166425 agaaaatcatggaagcctagactcattgctgaaactcaaaccaccaaagaacatgaagattttattaaagcaattattgtttttggaaaagaagaaattg 28166326  T
Q  160 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg 201  Q
    | |||||||||||||  || ||||||||||||||||||||||    
T  28166325 aggggatgaaaaaatatgtactgaatcaatggaagaaaaatg 28166284  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 44905270 - 44905128
Alignment:
Q  60 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 159  Q
    |||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||| ||| | |||||| |||||||| ||||||||||||||||||||    
T  44905270 agaaaatcatggaagcctagactcattgctgaaactcaaatcaccaaagaacatgaacattttgttaaggcaattattgtttttggaaaagaagaaattg 44905171  T
Q  160 aagggatgaaaaaa-tgggtgctgaatcaatggaagaaaaatg 201  Q
    | |||||||||||| |  ||  || ||||||||||||||||||    
T  44905170 aggggatgaaaaaaatatgtaatggatcaatggaagaaaaatg 44905128  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 37952800 - 37952900
Alignment:
Q  112 atgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaaat 211  Q
    ||||||||| | |||||| |||||||| ||| |||||||||||||| || |||||||||||||||||  ||||| ||||||||||||| ||| | |||||    
T  37952800 atgaagattgtgttaaggcaattattgttttcggaaaagaagaaatcgaggggatgaaaaaatgggtattgaatgaatggaagaaaaaagatcaagaaat 37952899  T
Q  212 c 212  Q
    |    
T  37952900 c 37952900  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 37896642 - 37896567
Alignment:
Q  134 tattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaa 209  Q
    ||||| ||||| |||||| ||||||||  | ||||||| |||||  || ||||||||||||||||||||| |||||    
T  37896642 tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaa 37896567  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 37958560 - 37958629
Alignment:
Q  134 tattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgat 203  Q
    ||||| ||||| |||||||||||||||  | ||||||| |||||  ||  ||||||||||||||||||||    
T  37958560 tattgtttttgcaaaagaagaaattgagagaatgaaaatatgggcacttgatcaatggaagaaaaatgat 37958629  T

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Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13228561 - 13228703
Alignment:
Q  59 aagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaatt 158  Q
    ||||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||||||| | |||||  |||||||| |||| ||||||||||||||    
T  13228561 aagaaaatcatggaagcctagactcattgctgaaactcaaatcaccaaagaacatgaagattttgttaagacaattattgtttttagaaaagaagaaatt 13228660  T
Q  159 gaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg 201  Q
    || |||||||||||||  || ||||||||||||||||||||||    
T  13228661 gaggggatgaaaaaatatgtactgaatcaatggaagaaaaatg 13228703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 40768376 - 40768235
Alignment:
Q  60 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 159  Q
    ||||||| |||||||  ||||||||||| | ||| ||||| |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||    
T  40768376 agaaaattatggaagcctagactcattgttgaaactcaaatcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattg 40768277  T
Q  160 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg 201  Q
    | |||||||||||||  || ||||||||||||||||||||||    
T  40768276 aggggatgaaaaaatatgtactgaatcaatggaagaaaaatg 40768235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 38757406 - 38757265
Alignment:
Q  60 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 159  Q
    |||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||||||| | ||||   |||||||| ||||| ||||||||||||||    
T  38757406 agaaaatcatggaagcctagactcattgctgaaactcaaatcaccaaagaacatgaagattttgttaaaacaattattgtttttgaaaaagaagaaattg 38757307  T
Q  160 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg 201  Q
    | |||||||||||||  |  ||||||||||||||||||||||    
T  38757306 aggggatgaaaaaatatgcactgaatcaatggaagaaaaatg 38757265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 6535513 - 6535444
Alignment:
Q  131 aattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg 201  Q
    |||||||| ||||||||||||||||||||  |||||||||||||  || || |||||||||||||||||||    
T  6535513 aattattgtttttggaaaagaagaaattg-ggggatgaaaaaatatgtacttaatcaatggaagaaaaatg 6535444  T

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