View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19958_high_4 (Length: 463)

Name: NF19958_high_4
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19958_high_4
NF19958_high_4
[»] chr4 (9 HSPs)
chr4 (12-447)||(29676346-29676782)
chr4 (99-316)||(35968306-35968523)
chr4 (43-311)||(36636764-36637032)
chr4 (99-193)||(35974134-35974228)
chr4 (178-306)||(38863107-38863235)
chr4 (129-262)||(36668513-36668646)
chr4 (125-181)||(36607460-36607516)
chr4 (148-311)||(36909544-36909707)
chr4 (43-181)||(36643459-36643597)
[»] chr5 (2 HSPs)
chr5 (99-316)||(19658216-19658433)
chr5 (99-316)||(19675055-19675272)
[»] chr1 (1 HSPs)
chr1 (99-311)||(42602757-42602969)
[»] chr8 (1 HSPs)
chr8 (208-344)||(35335816-35335952)
[»] chr6 (1 HSPs)
chr6 (230-306)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (248-301)||(43864074-43864127)
chr2 (248-301)||(43875241-43875294)
[»] chr7 (1 HSPs)
chr7 (254-286)||(32413649-32413681)
[»] chr3 (1 HSPs)
chr3 (256-316)||(25596897-25596957)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Complemental strand, 29676782 - 29676346
Alignment:
Q  12 atcatcacacacagagattcctaattcaagagtatt-ataggagcgaacatattttaaaatctttttaaggagatacggttctatcaaaccaggacggtg 110  Q
    |||| ||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676782 atcagcacacacagagattcctaattcaagagttgggatatgagcgaacatattttaaaatctttttaaggagatacggttctatcaaaccaggacggtg 29676683  T
Q  111 aagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29676682 aagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtggcaaatgttgaagcttgc 29676583  T
Q  211 aaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676582 aaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaa 29676483  T
Q  311 gtagaaggcaatccgataagttgcttagcctgtcttcaccttctttgttttcttcctcacagtgccttagtttcttcatcttttctagaacaagaattca 410  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676482 gtagaaggcaatccgataagtcgcttagcctgtcttcaccttctttgttttcttcctcacagtgccttagtttcttcatcttttctagaacaagaattca 29676383  T
Q  411 agaaaagaaaatgagcaattataaaggcaaagggaaa 447  Q
    |||||||||||||||||||||||||||||||||||||    
T  29676382 agaaaagaaaatgagcaattataaaggcaaagggaaa 29676346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 99 - 316
Target Start/End: Complemental strand, 35968523 - 35968306
Alignment:
Q  99 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 198  Q
    |||| |||||| || |||||||||| |||||| | | ||||||||||||||||||||||| ||||| |||||  ||| |||||| ||  |||||| |||     
T  35968523 accatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaa 35968424  T
Q  199 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 298  Q
     ||||||| | ||| ||||||||||  ||| ||||||||||||||||  |||| |||||||||| ||||||||||||||| ||||| | || ||| || |    
T  35968423 cttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatg 35968324  T
Q  299 acaaaatgcgaagtagaa 316  Q
    |||||||| |||| ||||    
T  35968323 acaaaatgtgaaggagaa 35968306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 36636764 - 36637032
Alignment:
Q  43 gtattataggagcgaacatattttaaaatctttttaaggagatacggttctatcaaaccaggacggtgaagatcaagagctagcagtgcagtcgaggtat 142  Q
    ||||||| ||||  |||||| |||||||||||||||||||| |  || || ||   |||| |||||| ||||||||||||  |||||||||| |||||||    
T  36636764 gtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcgtgcagtgcagttgaggtat 36636863  T
Q  143 cacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatg 242  Q
    ||||||||||||| || ||||| || ||  ||| |||||| |||| ||||| |||| |||| || | ||| ||||||||||| ||| |||||||||||||    
T  36636864 cacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttggaatacgtttccagagatg 36636963  T
Q  243 ttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaag 311  Q
    |    ||||||| |||||||  ||||||   || || ||||||| ||||||||| ||||||||| ||||    
T  36636964 tctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaatgtgaag 36637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 35974228 - 35974134
Alignment:
Q  99 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgg 193  Q
    |||| |||||| || ||||| |||| |||||||| | ||||||||||||||||||||||| ||| | |||||| ||| |||||| ||| ||||||    
T  35974228 accatgacggttaatatcaatagcttgcagtgcaattgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgcttacgagtgg 35974134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 38863107 - 38863235
Alignment:
Q  178 aattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacga 277  Q
    |||||||||| ||||| |||| ||||||  ||||| ||||||| ||| ||| ||||| |||||||||   |||||||||||||||  |||||| ||| |     
T  38863107 aattgtttaacagtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatgg 38863206  T
Q  278 cgtgtttggcattcaaaaacgacaaaatg 306  Q
    | ||||||| ||||||  | |||||||||    
T  38863207 catgtttggtattcaacgatgacaaaatg 38863235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 36668513 - 36668646
Alignment:
Q  129 tgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggata 228  Q
    |||||| ||| ||||||||||||||||||| ||||| || ||| | | |||||| |||| |  || |||| | ||||  ||||| ||||| ||||  |||    
T  36668513 tgcagttgagctatcacgaagagtcaaaatcttagacacaaatgttgtaaattgcttaacataggaaaatctagaagaatgcaatataagggttgaaata 36668612  T
Q  229 tgtttccagagatgttcatatctcttggacaaaa 262  Q
     ||||||||||||||||  ||||||| |||||||    
T  36668613 cgtttccagagatgttcccatctctttgacaaaa 36668646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 36607460 - 36607516
Alignment:
Q  125 gcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaatt 181  Q
    |||||||| | ||||||||||||||||||||||| || || |||||||||| |||||    
T  36607460 gcagtgcaattgaggtatcacgaagagtcaaaatatttgacacgaatttggtaaatt 36607516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 311
Target Start/End: Complemental strand, 36909707 - 36909544
Alignment:
Q  148 agagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcat 247  Q
    ||||||||||| ||||| |||||| | | |||||| |||| ||||| |||| ||||||  || || ||||||||||| ||  | |||||||||||| |      
T  36909707 agagtcaaaatcttagacacgaatgttgtaaattgcttaatagtggaaaatcttgaagaatgtaacataagagttggaattcgcttccagagatgtcccc 36909608  T
Q  248 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaag 311  Q
    |||||||||| ||||  ||||||   ||| | ||||||| |||||| || || |||||| ||||    
T  36909607 atctcttggaaaaaacacaagttccgacggcatgtttggtattcaagaatgataaaatgtgaag 36909544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 36643459 - 36643597
Alignment:
Q  43 gtattataggagcgaacatattttaaaatctttttaaggagatacggttctatcaaaccaggacggtgaagatcaagagctagcagtgcagtcgaggtat 142  Q
    ||||||| ||||| || ||| |||||||||||||||||||| |  ||||| ||   |||| |||| | |||||  |||||| |||| | ||| ||| |||    
T  36643459 gtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagcttgcagagaagttgagctat 36643558  T
Q  143 cacgaagagtcaaaattttagagacgaatttggaaaatt 181  Q
      |||||||||||||| ||||| |||||| ||| |||||    
T  36643559 tgcgaagagtcaaaatgttagacacgaatatggcaaatt 36643597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 316
Target Start/End: Original strand, 19658216 - 19658433
Alignment:
Q  99 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 198  Q
    |||| |||||| ||||||||| ||  ||| || | | ||||||||||||||||||||||| ||||  ||||||||||||||||| || ||||||| ||||    
T  19658216 accatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaat 19658315  T
Q  199 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 298  Q
     | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| |    
T  19658316 ttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatg 19658415  T
Q  299 acaaaatgcgaagtagaa 316  Q
    |||||||| |||| ||||    
T  19658416 acaaaatgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 316
Target Start/End: Original strand, 19675055 - 19675272
Alignment:
Q  99 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 198  Q
    |||| |||||| ||||||||| ||  ||| || | | ||||||||||||||||||||||| ||||  |||||||| |||||||| || ||||||| ||||    
T  19675055 accatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaat 19675154  T
Q  199 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 298  Q
     | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| |    
T  19675155 ttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatg 19675254  T
Q  299 acaaaatgcgaagtagaa 316  Q
    |||||||| |||| ||||    
T  19675255 acaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 99 - 311
Target Start/End: Original strand, 42602757 - 42602969
Alignment:
Q  99 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 198  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||| || || | |||||||||     
T  42602757 accatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatggaaaaatgcttcacagtgggaaag 42602856  T
Q  199 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 298  Q
     |||| |  | ||| |||||||| || ||| ||||||| | | | |   |||| |||||||| |||||||||||||||  ||||||||  || | ||| |    
T  42602857 tttgaggaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagtttgaacggtgtgtttggagttaagaaatg 42602956  T
Q  299 acaaaatgcgaag 311  Q
    |||||||| ||||    
T  42602957 acaaaatgtgaag 42602969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 344
Target Start/End: Complemental strand, 35335952 - 35335816
Alignment:
Q  208 tgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgc 307  Q
    ||||| ||||| ||||| ||| ||||||| |||||||   |||| |||||||||| |||||||||||| || ||||||| ||  || || |||||||||     
T  35335952 tgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatgt 35335853  T
Q  308 gaagtagaaggcaatccgataagttgcttagcctgtc 344  Q
    ||||||||| |||||| | |||||  |||| ||||||    
T  35335852 gaagtagaatgcaatcaggtaagtcacttatcctgtc 35335816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 33844287 - 33844363
Alignment:
Q  230 gtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatg 306  Q
    |||||||||||||||   ||||  ||||||||||||||||||||||| ||| || ||  |||||||| |||||||||    
T  33844287 gtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatg 33844363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 43864074 - 43864127
Alignment:
Q  248 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 301  Q
    |||| |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  43864074 atcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggaca 43864127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 43875241 - 43875294
Alignment:
Q  248 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 301  Q
    |||| |||||||||||||||||||||||||| | ||| ||||| ||||| ||||    
T  43875241 atcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggaca 43875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 32413681 - 32413649
Alignment:
Q  254 tggacaaaatgcaagtttgaacgacgtgtttgg 286  Q
    ||||||||||||||||||||||| |||||||||    
T  32413681 tggacaaaatgcaagtttgaacggcgtgtttgg 32413649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 25596957 - 25596897
Alignment:
Q  256 gacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 316  Q
    ||||||||||||||||||||| | |  |||| ||||||||| ||||||||| |||| ||||    
T  25596957 gacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaa 25596897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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