View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_high_9 (Length: 366)
Name: NF19958_high_9
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_high_9 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 173 - 348
Target Start/End: Complemental strand, 27511486 - 27511308
Alignment:
| Q |
173 |
tcatgaaccaagtcgtcttcaa---aaaggtgattcgaatcattcaaagtcgctaccattggagagagacagaggattatatgcttatccgtatgtatat |
269 |
Q |
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| T |
27511486 |
tcatgaatcaagtcgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgcttatccgtatgtatat |
27511387 |
T |
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| Q |
270 |
gcctgaacgcttgaaggaagatgtgaatatcaatgtgtatcagaacactcttagcattaaaggcgagagaggtggtcgt |
348 |
Q |
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| T |
27511386 |
gcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcgagagaggtggtcgt |
27511308 |
T |
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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 352
Target Start/End: Complemental strand, 33702465 - 33702384
Alignment:
| Q |
266 |
atatgcctgaacgcttgaaggaagatgtgaatatcaatgtgtatcagaacactcttagcattaaaggcgagagaggtggtcgtaaat |
352 |
Q |
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| T |
33702465 |
atatgcctgaacgcttgaaggaagatgtgaatatcaatgtgt-----aacactcttagcattaaaggcgagagaggtggtcgtaaat |
33702384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 352
Target Start/End: Original strand, 77779 - 77913
Alignment:
| Q |
204 |
tcgaatcattcaaagtcgctaccattggagagagacagaggattatatgcttatccgtatgtatatgcctgaacgcttgaaggaagatgtgaatatcaat |
303 |
Q |
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| T |
77779 |
tcgaatcattcaaagccgctaacgttggagagagacag--gattatatgcttatacgtatgtatatgcctggacgcattaaggaag------------at |
77864 |
T |
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| Q |
304 |
gtgtatcagaacactcttagcattaaaggcgagagaggtggtcgtaaat |
352 |
Q |
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| T |
77865 |
gtgtatcagaacactcttagcattaaaggtgagcgaggtggtcgtaaat |
77913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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