View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_1 (Length: 622)
Name: NF19958_low_1
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 22 - 622
Target Start/End: Original strand, 33694793 - 33695392
Alignment:
| Q |
22 |
ttcacccatccataatgttgattgatttcttttttcggacaatcaaccgtgtattttacctaaataattgaagggaaaactattagaagacggcattaat |
121 |
Q |
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| T |
33694793 |
ttcacccatccataatgttgattgatttcttttttcggacaatcaaccgtgtattttacctacataattgaagggaaaactattataagacggcattaat |
33694892 |
T |
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| Q |
122 |
tttcctctctagttaatgagattaatgaatataattttgataaggttataaatgttgacaagaggcaaagatccaacctctgtcacttgtttaaggattc |
221 |
Q |
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| T |
33694893 |
tttcctctctagttaatgagattaatgaata--attttgataaggttataaatgttgacaagaggcaaagatccaacctctgtcacttgtttaaggattc |
33694990 |
T |
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| Q |
222 |
aaaactcttcttatttgacaaattcattgctggttaaactttaattataatgcatgacaaatattaagacacannnnnnnnaaattattttgttaaaaat |
321 |
Q |
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| T |
33694991 |
aaaactcttcttatttgacaaattcattgctggttaaactttaattataatgcatgacaaatattaaaacacattttttttaaattattttgttaaaaat |
33695090 |
T |
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| Q |
322 |
attgagaaagagnnnnnnnnn-ttgttaattaaagtgactatgtagtttgaggttacaattctaaactcaaacttgagatttaactcaatggtgataact |
420 |
Q |
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| T |
33695091 |
attgagaaagagaaaaaaaaaattgttaattaaagtgactatgtagtttgaggttacaattctaaactcacacttgagatttaactcaatggtgataact |
33695190 |
T |
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| Q |
421 |
tagttttgtaaactcaagaaactttctaatggtgatgtctttgcacattaaaattattatagtgataataaaacctctcaatttcgtcattttacgtgga |
520 |
Q |
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| T |
33695191 |
tagttttgtaaactcaagaaactttctaatggtgacgtctttgcacattaaaattattatagtgataataaaacctctcaatttcatcattttacgtgga |
33695290 |
T |
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| Q |
521 |
ttgttatgtaagagaagttgcctactaattaggtttgatgtacttatcatatgtctttaaattgcttcttgttaaagatgtagtacttcgtcagaaattt |
620 |
Q |
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| T |
33695291 |
ttgttatgtaagagaagttgcctactaattaggtttgatgtacttatcatatgtctttaaattgctacttgttaaagatgtagtacttcgtcagaaattt |
33695390 |
T |
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