View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19958_low_13 (Length: 348)

Name: NF19958_low_13
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19958_low_13
NF19958_low_13
[»] chr6 (4 HSPs)
chr6 (1-163)||(14501878-14502040)
chr6 (218-348)||(14503751-14503882)
chr6 (89-161)||(19348548-19348619)
chr6 (53-146)||(7272044-7272136)
[»] chr7 (7 HSPs)
chr7 (52-160)||(27299322-27299427)
chr7 (49-161)||(20371771-20371882)
chr7 (53-114)||(27298142-27298203)
chr7 (259-313)||(26525512-26525566)
chr7 (52-101)||(12086126-12086174)
chr7 (52-104)||(22710036-22710088)
chr7 (212-304)||(32520671-32520763)
[»] chr4 (3 HSPs)
chr4 (53-163)||(29329167-29329277)
chr4 (53-133)||(49381420-49381500)
chr4 (47-110)||(50510272-50510335)
[»] chr8 (1 HSPs)
chr8 (52-114)||(45357146-45357208)
[»] chr1 (2 HSPs)
chr1 (53-146)||(41541918-41542012)
chr1 (53-132)||(26075999-26076078)
[»] chr2 (1 HSPs)
chr2 (53-101)||(43922846-43922894)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 14502040 - 14501878
Alignment:
Q  1 tatcatttaattatttaaaaatgtacattttttaattctagtgcaaaaagatttaaatgcaattttcatcctccttttgttgaatttgttaacttttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14502040 tatcatttaattatttaaaaatgtacattttttaattctagtgcaaaaagatttaaatgcaattttcatcctcctattgttgaatttgttaacttttgat 14501941  T
Q  101 accccattttttaagatcggatttttgatccccttatttaaaaagttgatgaaaaattctaat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  14501940 accccattttttaagatcggatttttgatccccttatttaaaaagtcaatgaaaaattctaat 14501878  T

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Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 218 - 348
Target Start/End: Complemental strand, 14503882 - 14503751
Alignment:
Q  218 tccacaagcccagcctaaaatacaaatacactttaaatacttttctctcagttctcacctcaacaagcccttttcattcttctttctttcagcaagcgaa 317  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14503882 tccacaagcccagcctaaaacacaaatacactttaaatacttttctctcagttctcacctcaacaagcccttttcattcttctttctttcagcaagcgaa 14503783  T
Q  318 c-acacaacacagaagcaagcgtttttcattc 348  Q
    | ||||||||||||||||||||||||||||||    
T  14503782 caacacaacacagaagcaagcgtttttcattc 14503751  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 19348619 - 19348548
Alignment:
Q  89 ttaacttttgataccccattttttaagatcggatttttgatccccttatttaaaaagttgatgaaaaattcta 161  Q
    ||||||||||||||||||||||  || ||||||||||| |||||||| ||||||||||  |||||||||||||    
T  19348619 ttaacttttgataccccattttccaaaatcggattttt-atccccttgtttaaaaagtcaatgaaaaattcta 19348548  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 7272044 - 7272136
Alignment:
Q  53 ttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccccattttttaagatcggatttttgatccccttatttaaaaagt 146  Q
    |||||| ||||||| |||| ||| || || || |||| |||||||||||||||  ||||||| ||| | ||||||||||| |||||||||||||    
T  7272044 ttaaatacaattttgatccccctatttttaaaattgt-aacttttgatacccctatttttaaaatcagttttttgatccctttatttaaaaagt 7272136  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 27299427 - 27299322
Alignment:
Q  52 tttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccccattttttaagatcggatttttgatccccttatttaaaaagttgatg 151  Q
    |||||||| |||||| ||||| ||  | |||||||||||||||||||||||| |   | |||| |||||||||||||||||| | ||||||||||  |||    
T  27299427 tttaaatgtaattttgatccttctaattttgaatttgttaacttttgatacctc---tattaaaatcggatttttgatccccatgtttaaaaagtcaatg 27299331  T
Q  152 aaaaattct 160  Q
    |||||||||    
T  27299330 aaaaattct 27299322  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 20371771 - 20371882
Alignment:
Q  49 agatttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccccattttttaagatcggatttttgatccccttatttaaaaagttg 148  Q
    |||||||||||||||||| |||| | | || |  |||||||||||||||| ||||||||||| ||| || || ||| |||| ||| ||||||||||||      
T  20371771 agatttaaatgcaattttgatccccttattttcaaatttgttaacttttggtaccccattttctaaaatgggttttatgat-cccatatttaaaaagtca 20371869  T
Q  149 atgaaaaattcta 161  Q
    | |||||||||||    
T  20371870 aagaaaaattcta 20371882  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 27298142 - 27298203
Alignment:
Q  53 ttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccccattttttaa 114  Q
    |||||||||||||| ||   ||| || || ||||||||||||||||||||||||||||||||    
T  27298142 ttaaatgcaattttaatttccctattttttaatttgttaacttttgataccccattttttaa 27298203  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 26525512 - 26525566
Alignment:
Q  259 tttctctcagttctcacctcaacaagcccttttcattcttctttctttcagcaag 313  Q
    |||| |||| ||||||| ||| ||||||||||||||| |||||||| ||||||||    
T  26525512 tttccctcacttctcacttcagcaagcccttttcattgttctttctctcagcaag 26525566  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 12086174 - 12086126
Alignment:
Q  52 tttaaatgcaattttcatcctccttttgttgaatttgttaacttttgata 101  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  12086174 tttaaatgcaattttcatcctcctattttttaa-ttgttaacttttgata 12086126  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 22710088 - 22710036
Alignment:
Q  52 tttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccc 104  Q
    ||||||||||||||| |||| ||| || || ||||||| ||||||||||||||    
T  22710088 tttaaatgcaattttgatccccctatttttaaatttgtgaacttttgataccc 22710036  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 32520763 - 32520671
Alignment:
Q  212 gtttggtccacaagcccagcctaaaatacaaatacactttaaatacttttctctcagttctcacctcaacaagcccttttcattcttctttct 304  Q
    ||||||||||||||||||  | |||| | || |||  | |||| ||||| | |||| ||||||| |||||| ||||||||||||||| |||||    
T  32520763 gtttggtccacaagcccaatccaaaacataagtacgttgtaaacactttcccctcacttctcacttcaacatgcccttttcattcttttttct 32520671  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 29329167 - 29329277
Alignment:
Q  53 ttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccccattttttaagatcggatttttgatccccttatttaaaaagttgatga 152  Q
    ||||||||| |||| |||| ||| || ||||||||||| ||||||||||||  ||||| ||| ||| || || |||||||| ||||||||||||| || |    
T  29329167 ttaaatgcatttttgatccccctatttttgaatttgttgacttttgataccttattttataaaatcagaattatgatccccctatttaaaaagttaatta 29329266  T
Q  153 aaaattctaat 163  Q
    |||||| ||||    
T  29329267 aaaattataat 29329277  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 49381500 - 49381420
Alignment:
Q  53 ttaaatgcaattttcatcctcctt-ttgttgaatttgttaacttttgataccccattttttaagatcggatttttgatcccc 133  Q
    |||||||||||||| ||| ||||| || || || ||||||||||||||||| ||||||||||| ||| |  |||||||||||    
T  49381500 ttaaatgcaattttgatc-tccttatttttaaaattgttaacttttgatactccattttttaaaatcagcattttgatcccc 49381420  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 50510272 - 50510335
Alignment:
Q  47 aaagatttaaatgcaattttcatcctccttttgttgaat-ttgttaacttttgataccccatttt 110  Q
    |||| ||||||||||||||| |||||||| || || ||| |||||||||||||||||| ||||||    
T  50510272 aaaggtttaaatgcaattttgatcctcctatt-ttcaatcttgttaacttttgatacctcatttt 50510335  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 45357208 - 45357146
Alignment:
Q  52 tttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccccattttttaa 114  Q
    ||||||||||||||| |||||||| || || || |||||||||||||||| ||||||||||||    
T  45357208 tttaaatgcaattttgatcctcctatttttaaaattgttaacttttgatatcccattttttaa 45357146  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 41542012 - 41541918
Alignment:
Q  53 ttaaatgcaattttcatcctccttttgttgaatttgttaacttttgatacccca-ttttttaagatcggatttttgatccccttatttaaaaagt 146  Q
    |||||||||||||| |||| | | || |||||||||||||||||||||||| || |||||||| ||||| ||||||| || ||  ||||||||||    
T  41542012 ttaaatgcaattttgatccccttatttttgaatttgttaacttttgatacctcatttttttaaaatcggttttttgaacctctattttaaaaagt 41541918  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 26076078 - 26075999
Alignment:
Q  53 ttaaatgcaattttcatcctccttttgttgaatttgttaacttttgataccccattttttaagatcggatttttgatccc 132  Q
    |||||||||||||| |||| ||| || |  |||||||||| ||||||||||||||||| ||| || || |||||||||||    
T  26076078 ttaaatgcaattttgatccccctattttctaatttgttaatttttgataccccattttctaaaatgggttttttgatccc 26075999  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 43922846 - 43922894
Alignment:
Q  53 ttaaatgcaattttcatcctccttttgttgaatttgttaacttttgata 101  Q
    |||||||||||||| |||||||| |  ||||||||||||||||||||||    
T  43922846 ttaaatgcaattttgatcctcctatatttgaatttgttaacttttgata 43922894  T

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