View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19958_low_14 (Length: 328)
Name: NF19958_low_14
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 14503774 - 14503668
Alignment:
| Q |
15 |
cacagaagcaagcgtttttcattcttattaaatttaggctttgtcatatattgtgaatggcttggcatgtgtaatcatctacctcatggatgaacaagtt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14503774 |
cacagaagcaagcgtttttcattcttattaaatttaggcttagtcatatattgtgaatagcttggcatgtgtaatcatctacctcatggatgaacaagtt |
14503675 |
T |
|
| Q |
115 |
tttaagt |
121 |
Q |
| |
|
|| |||| |
|
|
| T |
14503674 |
ttcaagt |
14503668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 30710961 - 30710870
Alignment:
| Q |
30 |
ttttcattcttattaaatttaggctttgtcatatattgtgaatggcttggcatgtgtaatcatctacctcatggatgaacaagtttttaagt |
121 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
30710961 |
ttttcattcttattaaatttaggctaagtcatatattgtgaatggcttggcatgtgtaatcatctatatcatggatgaacaagttttcaagt |
30710870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 14503220 - 14503066
Alignment:
| Q |
156 |
tattgcagcagaaagaaaactacatagcat-atccacacaaaccagcttcaacaagtaattttcacacaccatagaaacacacttcaatnnnnnnnn--- |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14503220 |
tattgtagcagaaagaaaactacatagcacgatccacagaaagcagcttcaacaagtaattt------accatagaaacacacttcaataaaaaaaaaaa |
14503127 |
T |
|
| Q |
252 |
tgaaacagaagaatttaccataaaaacaatctagaaattgattatgcttgaacattggtga |
312 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14503126 |
tgaagcagaagaatttaccatgaaaataatctagaaattgattatgcttgaacattggtga |
14503066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 8240727 - 8240626
Alignment:
| Q |
20 |
aagcaagcgtttttcattcttattaaatttaggctttgtcatatattgtgaatggcttggcatgtgtaatcatctacctcatggatgaacaagtttttaa |
119 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |
|
|
| T |
8240727 |
aagcaagtgcttttcattcctattaaatttaggctaagtcatatattgtgaatggcttggcatgtgtaatcatctatctcatggatgaagaagttttcaa |
8240628 |
T |
|
| Q |
120 |
gt |
121 |
Q |
| |
|
|| |
|
|
| T |
8240627 |
gt |
8240626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 53226197 - 53226295
Alignment:
| Q |
18 |
agaagcaagcgtttttcattcttattaaatttaggctttgtcatatattgtgaatggcttggcatgtgtaatcatctacctcatggatgaacaagtttt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
53226197 |
agaagcaagcacttttcattcttattaaatttaggctaagtaatatattgtgaatggtttgacatgtgtaatcgtctatctcatggatgaacaagtttt |
53226295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 14545702 - 14545660
Alignment:
| Q |
269 |
ccataaaaacaatctagaaattgattatgcttgaacattggtga |
312 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14545702 |
ccatgaaaacaatctagaaattgattatgctt-aacattggtga |
14545660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 32520632 - 32520552
Alignment:
| Q |
30 |
ttttcattcttattaaatttaggctttgtcatatattgtgaatggcttggcatgtgtaatcatctacctcatggatgaaca |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
32520632 |
ttttcattcttattaaatttaggctaagtcatatattgtgaattgcttggcatgtgtaatcatttatctcatggatgaaca |
32520552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University