View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_16 (Length: 317)
Name: NF19958_low_16
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_16 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 31739138 - 31739435
Alignment:
| Q |
23 |
cctcctagcatactcttcagcaacaatcatagcagcaacaccttttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccacatca |
122 |
Q |
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| T |
31739138 |
cctcctagcatactcctcagcaacaatcataacagcaacacattttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccacatca |
31739237 |
T |
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| Q |
123 |
ccacaaccaccaccgctaacaataacaatttcaggcg---gcggcaccactttcggcaccgcaacttgaatcgttccaccatcttccttttgtgaatcac |
219 |
Q |
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| T |
31739238 |
ccataaccaccaccgctaacaacaacaatttcaggcggcggcggcaccactttcggcaccgcaacttgaatcgttccaccatcttccttccgtgaatcac |
31739337 |
T |
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| Q |
220 |
cgaggacggaagcggtgtagggttgacggcagcgatgacttctatttgggctctggtggcagtgttgtttccgtttggaatggaattcgtttccattg |
317 |
Q |
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| T |
31739338 |
cgaggacggaaggggtgtagggttgacggcagcgatgacttcaatttgggctccagcggcagtgttgtttccgtttggaatggaattcgtttccattg |
31739435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 19914268 - 19914568
Alignment:
| Q |
19 |
caagcctcctagcatactcttcagcaacaatcatagcagcaacaccttttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccac |
118 |
Q |
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| T |
19914268 |
caagcctccttgcatactcctcagcaacaatcatagaagcaacaccttt-ctatgaagagcatcacgcttagctttcatggatgcagattcattaaccac |
19914366 |
T |
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| Q |
119 |
atcaccacaaccaccaccgctaacaataacaatttcaggcggcgg---caccactttcggcaccgcaacttgaatcgttccaccatcttccttttgtgaa |
215 |
Q |
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| T |
19914367 |
atcaccacaaccaccactgctaacaagaacaatttcaggcggcggtgacaccactttcggcaccgcaacttgaattgttccaccatcttccttccgtgaa |
19914466 |
T |
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| Q |
216 |
tcaccgaggacggaagcggtgtagggttgacggcagcgatgacttctatttgggctctggtggcagtgttgtttccgtttggaatggaattcgtttccat |
315 |
Q |
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| T |
19914467 |
tcaccgaggacggaaggggtgtagagttgacggcagcgatgacttcgatttgtgctccgacgacagtgttgtttccgtttggaatggaattcgttttcat |
19914566 |
T |
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| Q |
316 |
tg |
317 |
Q |
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|| |
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| T |
19914567 |
tg |
19914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 13938386 - 13938170
Alignment:
| Q |
19 |
caagcctcctagcatactcttcagcaacaatcatagcagcaacaccttttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccac |
118 |
Q |
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||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13938386 |
caagcctcctagcatactcctcagcagcaatcatagcagcagcaccttttctctgaagagcatcacgcttagctttcatggatgcagattcatcaaccac |
13938287 |
T |
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| Q |
119 |
atca------ccacaaccaccaccgctaacaataacaatttc------aggcggcggcaccactttcggcaccgcaacttgaatcgttccaccatcttcc |
206 |
Q |
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|||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13938286 |
atcaccaccaccaccaccaccaccgctaacagcaacaatttcctgcggcggcggtggcaccactttcggcaccgcaacttgaatcgttccaccatcttcc |
13938187 |
T |
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| Q |
207 |
ttttgtgaatcaccgag |
223 |
Q |
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| T |
13938186 |
ttccgtgaatcaccgag |
13938170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 52446805 - 52446889
Alignment:
| Q |
233 |
ggtgtagggttgacggcagcgatgacttctatttgggctctggtggcagtgttgtttccgtttggaatggaattcgtttccattg |
317 |
Q |
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||||||||||||||||| ||||| || | |||||||||| || ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
52446805 |
ggtgtagggttgacggcggcgatagctccgatttgggctccggcggcagtgttgtttccgtttggaatggaatccatttccattg |
52446889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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