View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19958_low_17 (Length: 307)
Name: NF19958_low_17
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 39712545 - 39712825
Alignment:
| Q |
17 |
tcctccagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaa |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39712545 |
tcctctagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcatcacctccttgatggataaaagaccaagatttcatgaaa |
39712644 |
T |
|
| Q |
117 |
tgattgcaactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39712645 |
tgattgcaactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagag |
39712744 |
T |
|
| Q |
217 |
tgaatgtgtcattttcaatgttattaatatcttcaaccctagttttgtgtgttaatattggagcaaggtgattattttctt |
297 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39712745 |
tgaatgtgtcattttcaatgtcattaatatcttcaaccctagttttgtgtgttaatattggagcaaggtgattattttctt |
39712825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 11528163 - 11528433
Alignment:
| Q |
24 |
gggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgc |
123 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| ||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11528163 |
gggtccctcaaaacttctctgtcaaaacaaggtagtgatttcaattcaactacatcacctctttgatggataaaagaccaagatttcatgaaatgatcgc |
11528262 |
T |
|
| Q |
124 |
aactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgt |
223 |
Q |
| |
|
|||| || ||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
11528263 |
aacttctatcatccatcacgtgacaatatgtgatgccaatgcaaagaccatggtcgggaaaaactgtgacttgcaaagccaacaatggaagaatgaatgt |
11528362 |
T |
|
| Q |
224 |
gtcattttcaatgttattaatatcttcaaccctagttttgtgtgttaatattggagcaaggtgattattttctt |
297 |
Q |
| |
|
||||||||||||||||| |||| |||| | | |||||| ||||||| ||||| ||||||||||| |||||| |
|
|
| T |
11528363 |
gtcattttcaatgttat---tatcatcaaacttgtttttgtttgttaatgttggaacaaggtgattagtttctt |
11528433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 28166469 - 28166684
Alignment:
| Q |
25 |
ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca |
124 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28166469 |
ggtccctcaaaacttctctgtcaaaacaaggtaatgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca |
28166568 |
T |
|
| Q |
125 |
actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgtg |
224 |
Q |
| |
|
||| ||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
28166569 |
actattatcatccatcacgtggcaatatgtgatgccaatgcaaataccatggtcaggaaaaactgtgacttgcaaagctaacaatggaaggatgaatgtg |
28166668 |
T |
|
| Q |
225 |
tcattttcaatgttat |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28166669 |
tcattttcaatgttat |
28166684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 44905314 - 44905529
Alignment:
| Q |
25 |
ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca |
124 |
Q |
| |
|
||||| ||||||||||||| |||||||||| |||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44905314 |
ggtccctcaaaacttctctgtcaaaacaagatagtgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca |
44905413 |
T |
|
| Q |
125 |
actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgtg |
224 |
Q |
| |
|
||| ||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
44905414 |
actattatcatccatcacgtggcaatatgtgatgccaatgcaaataccatggtcaggaaaaactgtgacttgcaaagctaacaatggaaggatgaatgtg |
44905513 |
T |
|
| Q |
225 |
tcattttcaatgttat |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44905514 |
tcattttcaatgttat |
44905529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 37952690 - 37952509
Alignment:
| Q |
32 |
caaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaactgtta |
131 |
Q |
| |
|
|||||||| ||| |||||||||||| | ||||| || ||| || | |||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
37952690 |
caaaacttgtctgtcaaaacaaggttgcgacttgaagtcaactacatcacctttacgatggataaaagaccaagatttcattaaatgattgcaacagtta |
37952591 |
T |
|
| Q |
132 |
ccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaa |
213 |
Q |
| |
|
|||||||||| ||||||||| | ||| ||||||||| |||||||||||| ||||| | ||||||||||| |||||| |||| |
|
|
| T |
37952590 |
tcatccatcacatggcaatatttgatggcaatgcaaagaccatggttggggaaaaccgtgacttgcaaagacaacaacggaa |
37952509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 37896748 - 37896966
Alignment:
| Q |
24 |
gggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgc |
123 |
Q |
| |
|
|||||| | |||| || |||||||||||||||| ||||||||| ||| || |||||| | ||| ||||||||||||||||||||||||||| | | |
|
|
| T |
37896748 |
gggtccctaaaaatttttctatcaaaacaaggtgttgacttcaagtcaactacttcacaatttctatgcataaaagaccaagatttcatgaaatgactac |
37896847 |
T |
|
| Q |
124 |
aactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgt |
223 |
Q |
| |
|
||| || ||||||| || || |||||||| || ||||||||| ||||||||| || ||||| || |||||||||||||||| || | | ||||||| |
|
|
| T |
37896848 |
aacaactatcatccattacatgacaatatgtgattgcaatgcaaagaccatggttagggaaaacagaagcttgcaaagccaacaaagggaaaatgaatgt |
37896947 |
T |
|
| Q |
224 |
gtcattttcaatgttatta |
242 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
37896948 |
gttattttcaatgtcatta |
37896966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 37958442 - 37958224
Alignment:
| Q |
24 |
gggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgc |
123 |
Q |
| |
|
|||||| |||||| | ||||||||||||||| ||||||||| ||| || |||||| | ||| |||||||||||||| |||||||||||| | | |
|
|
| T |
37958442 |
gggtccctcaaaaaatttctatcaaaacaaggagttgacttcaagtcaactacttcacaatttctatgtataaaagaccaagacttcatgaaatgactac |
37958343 |
T |
|
| Q |
124 |
aactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgt |
223 |
Q |
| |
|
||| || ||||||| || || |||||||| || ||||||||| ||||||||| || ||||| || ||||||||| |||||| || | | ||||||| |
|
|
| T |
37958342 |
aacaactatcatccattacatgacaatatgtgattgcaatgcaaagaccatggttagggaaaacagaagcttgcaaagacaacaaagggaaaatgaatgt |
37958243 |
T |
|
| Q |
224 |
gtcattttcaatgttatta |
242 |
Q |
| |
|
|| ||| ||||||| |||| |
|
|
| T |
37958242 |
gttattctcaatgtcatta |
37958224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 38757450 - 38757665
Alignment:
| Q |
25 |
ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca |
124 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38757450 |
ggtccctcaaaacttctctgtcaaaacaaggtagtgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca |
38757549 |
T |
|
| Q |
125 |
actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgtg |
224 |
Q |
| |
|
||| ||| ||||||||| ||| |||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
38757550 |
actattatcatccatcatgtgtcaatatgtgatgccaatgcaaataccatggtcaggaaaaactgtgacttgcaaagctaacaatggaaggatgaatgtg |
38757649 |
T |
|
| Q |
225 |
tcattttcaatgttat |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38757650 |
tcattttcaatgttat |
38757665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 11149263 - 11149048
Alignment:
| Q |
25 |
ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11149263 |
ggtccctcaaaacttctctatcaaaacaaggtagtgtcttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca |
11149164 |
T |
|
| Q |
125 |
actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgtg |
224 |
Q |
| |
|
||| ||| ||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||||| ||||| |||||||| |
|
|
| T |
11149163 |
actattatcatccatcatgtggcaatatgtgatgccaatgcaaataccatggtcaggaaaaactgtgacttgcaaagctaacaacggaaggatgaatgtg |
11149064 |
T |
|
| Q |
225 |
tcattttcaatgttat |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11149063 |
tcattttcaatgttat |
11149048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 34538932 - 34539147
Alignment:
| Q |
25 |
ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca |
124 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||||||||| || | | |||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
34538932 |
ggtccctcaaaacttctttgtcaaaacaaggtagtgacttcaattcaactacatttcctccttgatggataaaagatcaatatttcatgaaatgattgca |
34539031 |
T |
|
| Q |
125 |
actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgtg |
224 |
Q |
| |
|
||| ||| ||||||||||| | |||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
34539032 |
actattatcatccatcacgggacaatatgtgatgccaatgcaaataccatggtcaggaaaaactgtgacttgcaaagctaacaatggaaggatgaatgtg |
34539131 |
T |
|
| Q |
225 |
tcattttcaatgttat |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34539132 |
tcattttcaatgttat |
34539147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 13228518 - 13228303
Alignment:
| Q |
25 |
ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca |
124 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| || | | ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13228518 |
ggtccctcaaaacttctctgtcaaaacaaggtagtgacttcaattcaactacatttcctcctttatggataaaagaccaagatttcatgaaatgattgca |
13228419 |
T |
|
| Q |
125 |
actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgtg |
224 |
Q |
| |
|
||| ||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||||| ||| |||| |
|
|
| T |
13228418 |
actattatcatccatcacgtggcaatatgtgatgccaatgcaaataccatggtcaagaaaaactgtgacttgcaaagctaacaatggaaggatgattgtg |
13228319 |
T |
|
| Q |
225 |
tcattttcaatgttat |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13228318 |
tcattttcaatgttat |
13228303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 40768428 - 40768635
Alignment:
| Q |
33 |
aaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaactgttac |
132 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| | || | | ||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
40768428 |
aaaacttctctgtcaaaacaaggcagtgacttcaatttaactacattttctccttgatggataaaagaccaagatttcataaaatgattgcaactattat |
40768527 |
T |
|
| Q |
133 |
catccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactgagacttgcaaagccaacaatggaagagtgaatgtgtcattttc |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40768528 |
catccatcacgtggcaatatgtgatgccaatgcaaataccatggttaggaaaaactgtgacttgcaaagctaacaatggaaggatgaatgtgtcattttc |
40768627 |
T |
|
| Q |
233 |
aatgttat |
240 |
Q |
| |
|
|||||||| |
|
|
| T |
40768628 |
aatgttat |
40768635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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