View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_2 (Length: 611)
Name: NF19958_low_2
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 44071891 - 44072489
Alignment:
| Q |
1 |
ccaaatccaactcagtttctttgtaggaagaaggaggcatcaaaattacacttgaaccttcccctattcggtttctgccaccgaacatccgtctgacacg |
100 |
Q |
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| T |
44071891 |
ccaaatccaactcagtttctttgtaggaagaaggaggcatcaaaattacacttgaaccttcccctattcggtttctgccaccgaacatctgtctgacacg |
44071990 |
T |
|
| Q |
101 |
atcctgttctgcttgagctcacggtagcagtagcaaaatttgaattcgaatgctgcttgacttgcaacgggatgtgactcatgtgaggcaactggccaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44071991 |
atcctgttctgcttgagctcacggtagcagtagcaaaatttgaattcgaatgctgcttgacttgcaacgggatgtgactcatgtgaggcaactgaccaca |
44072090 |
T |
|
| Q |
201 |
ttctaatcttcaagcaaattcacttctctatccaagatttgcgcactagtttcaatcacattatgccataattttatatttctatgcttccttatgctcc |
300 |
Q |
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| T |
44072091 |
ttctaatcttcaagcaaattcacttctctatccaagatttgcacactagtttcaatcacattatgccataatttcatatttctatgcttccttatgctcc |
44072190 |
T |
|
| Q |
301 |
acataataattgtcattttatttgcattaagttgagataattgcttctaaaaagcgcctttaaattatttgataaatgatttgtgaaattattaaagatg |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44072191 |
acataataattgtcattttatttgcattaagctgagataattgcttctaagaagcgcctttaaattatttgataaatgatttgtgaaatcattaaagatg |
44072290 |
T |
|
| Q |
401 |
gcgtgactttgatttataaaggtaatttatatttagaagagatgattccgaccacttactttgacatatcgctggttgggtatttcaacagccgtttctc |
500 |
Q |
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| T |
44072291 |
gcgtgactttgatttataaaggtaatttatacttagaagagatgattctgaccacttactttgacatattgctggttgggtatttcaacagccgtttctc |
44072390 |
T |
|
| Q |
501 |
cagatacttgatgtcacatgcaataa----ttttttggcgcgtacgtttttaaaaagaacatttgtgcttgctttcaggttatttggttggtccgtctt |
595 |
Q |
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| ||||||||||||||| |||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
44072391 |
cggatacttgatgtcacgtgcaataaaaagaacatttgcgcttacgtttttaaaaagaacatttgcgcttgctttcaggttatttggttggtctgtctt |
44072489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 587
Target Start/End: Original strand, 7410854 - 7410914
Alignment:
| Q |
527 |
ttttttggcgcgtacgtttttaaaaagaacatttgtgcttgctttcaggttatttggttgg |
587 |
Q |
| |
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| T |
7410854 |
ttttttgtcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttgg |
7410914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 587
Target Start/End: Original strand, 1386473 - 1386533
Alignment:
| Q |
527 |
ttttttggcgcgtacgtttttaaaaagaacatttgtgcttgctttcaggttatttggttgg |
587 |
Q |
| |
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|||||||| ||||||| ||| |||||||||||| ||||||||||| ||| ||||||||| |
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| T |
1386473 |
ttttttggtgcgtacgctttcaaaaagaacattcacgcttgctttcaagttgtttggttgg |
1386533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 587
Target Start/End: Complemental strand, 16125859 - 16125823
Alignment:
| Q |
551 |
aagaacatttgtgcttgctttcaggttatttggttgg |
587 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||| |
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| T |
16125859 |
aagaacatttgtgcttgcttttaggttgtttggttgg |
16125823 |
T |
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