View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19958_low_23 (Length: 254)
Name: NF19958_low_23
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 22890580 - 22890764
Alignment:
| Q |
1 |
ggaatgcaacaatattatcatcaatcggatagtcctttgtcaacagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22890580 |
ggaatgcaacaatattatcatcaatcggatagtcctttgtcaacagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccag |
22890679 |
T |
|
| Q |
101 |
aggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaattttgtctt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22890680 |
aggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaattttgtctt |
22890764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 22942244 - 22942428
Alignment:
| Q |
1 |
ggaatgcaacaatattatcatcaatcggatagtcctttgtcaacagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22942244 |
ggaatgcaacaatattatcatcaatcggatagtcctttgtcaacagagagtaacatgataatagaagaaatgagcagaccagccagtccttacagcccag |
22942343 |
T |
|
| Q |
101 |
aggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaattttgtctt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22942344 |
aggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaattttgtctt |
22942428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 41011858 - 41011940
Alignment:
| Q |
94 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
176 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| ||||| |||| |||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
41011858 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
41011940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University