View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_24 (Length: 254)
Name: NF19958_low_24
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 16146717 - 16146503
Alignment:
| Q |
18 |
tattctatcaattaattggtgaataaaatcatgaagataatacatttgaaatagctatgaatatcatacatacttattctatttcctttaagatcaaact |
117 |
Q |
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| T |
16146717 |
tattctatcaattaattgatgaataaaatcatgaagataatacatttgaaatagctatgaatatcatacatacttattgtatttcctttaagatcaaact |
16146618 |
T |
|
| Q |
118 |
caacgatcataggaacaaaggcaaagactcatatcaagggcatcgacacacttcccaacacccgttttactatatcgactaacacaccttttgttgcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16146617 |
caacgatcataggaacaaaggcaaagactcatatcaagggcatcaacacacttcccaacacccgttttactatatctactaacacaccttttgttgcaac |
16146518 |
T |
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| Q |
218 |
aatcatcttgacagt |
232 |
Q |
| |
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||||||||||||||| |
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| T |
16146517 |
aatcatcttgacagt |
16146503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 16177070 - 16176856
Alignment:
| Q |
18 |
tattctatcaattaattggtgaataaaatcatgaagataatacatttgaaatagctatgaatatcatacatacttattctatttcctttaagatcaaact |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||| |||||||| |||||||||| | |
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| T |
16177070 |
tattctatcaattaattggtgaataaaatcatgaagagaatgcatttgaaatagctatgaatatcatacaaatttattgtatttcctctaagatcaaatt |
16176971 |
T |
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| Q |
118 |
caacgatcataggaacaaaggcaaagactcatatcaagggcatcgacacacttcccaacacccgttttactatatcgactaacacaccttttgttgcaac |
217 |
Q |
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|||||||||||||||||||| |||||| ||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16176970 |
caacgatcataggaacaaagacaaagaatcataccaaaggcatcgacacaattcccagaacccgttttactatatcgactaacacaccttttgttgcaac |
16176871 |
T |
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| Q |
218 |
aatcatcttgacagt |
232 |
Q |
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| ||||||||||||| |
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| T |
16176870 |
attcatcttgacagt |
16176856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 16155349 - 16155148
Alignment:
| Q |
23 |
tatcaattaattggtgaataaaatcatgaagataatacatttgaaatagctatga--atatcatacatacttattctatttcctttaagatcaaactcaa |
120 |
Q |
| |
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||||||||||||| |||||||||||| ||||| |||||||||||||| |||| || |||||||| || |||||| |||||||||||||||||||||||| |
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| T |
16155349 |
tatcaattaattgatgaataaaatcacgaagagaatacatttgaaatcgctaggaatatatcatatatgcttattgtatttcctttaagatcaaactcaa |
16155250 |
T |
|
| Q |
121 |
cgatcataggaacaaaggcaaagactcatatcaagggcatcgacacacttcccaacacccgttttactatatcgactaacacaccttttgttgcaacaat |
220 |
Q |
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||| |||| ||||| ||||| | ||||| || ||||| ||||| |||| |||| ||||||||||||| |||||||||| ||||||||||||||| |
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| T |
16155249 |
cgaagatagttacaaatgcaaaaaagcatatgaaaggcattaacacagaccccagcacctgttttactatatctactaacacactttttgttgcaacaat |
16155150 |
T |
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| Q |
221 |
ca |
222 |
Q |
| |
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|| |
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|
| T |
16155149 |
ca |
16155148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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