View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19958_low_28 (Length: 233)

Name: NF19958_low_28
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19958_low_28
NF19958_low_28
[»] chr7 (3 HSPs)
chr7 (1-227)||(31957608-31957832)
chr7 (45-100)||(10325730-10325785)
chr7 (45-98)||(20491883-20491936)
[»] chr1 (4 HSPs)
chr1 (24-205)||(33314466-33314647)
chr1 (45-98)||(2113760-2113813)
chr1 (45-106)||(39285831-39285892)
chr1 (45-105)||(3601876-3601936)
[»] chr4 (5 HSPs)
chr4 (1-132)||(49407672-49407802)
chr4 (1-95)||(1479843-1479937)
chr4 (51-98)||(37837072-37837119)
chr4 (45-98)||(9632278-9632331)
chr4 (45-98)||(17284133-17284186)
[»] chr2 (1 HSPs)
chr2 (12-79)||(6859871-6859938)
[»] chr3 (2 HSPs)
chr3 (55-96)||(10347149-10347190)
chr3 (54-98)||(42436411-42436455)
[»] chr8 (1 HSPs)
chr8 (46-98)||(9809373-9809425)
[»] chr5 (1 HSPs)
chr5 (54-98)||(8704147-8704191)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31957608 - 31957832
Alignment:
Q  1 caaagaattcacattgtcgtaaaaaacatttcgctttgacctagagaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31957608 caaagaattcacattgtcgtaaaaaacatttcgctttgacg--gagaaagtttctgcaaaagagtgaaaattagtgcattaatattataatcttgacgca 31957705  T
Q  101 acacctagattatggtatcccacatattcacaccacaccacgtctggacagctttaggacactctacaaggacatgaatgttgtcctcgtaattactatc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31957706 acacctagattatggtatcccacatattcacactacaccacgtctggacagctttaggacactctccaaggacatgaatgttgtcctcgtaattactatc 31957805  T
Q  201 acacgcaacacaatcaattggacaaga 227  Q
    |||||||||||||||||||||||||||    
T  31957806 acacgcaacacaatcaattggacaaga 31957832  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 10325730 - 10325785
Alignment:
Q  45 agaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacgca 100  Q
    ||||| || |||||||||||||||||  |||||||| |||||| ||||||||||||    
T  10325730 agaaaattactgcaaaagagtgaaaaaaagtgcatttatattacaatcttgacgca 10325785  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 20491936 - 20491883
Alignment:
Q  45 agaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    ||||| ||| || |||||||||||||| |||||||  |||||||||||||||||    
T  20491936 agaaaattgttgtaaaagagtgaaaataagtgcatgtatattataatcttgacg 20491883  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 33314647 - 33314466
Alignment:
Q  24 aaacatttcgctttgacctagagaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacgcaacacctagattatggtatcccac 123  Q
    ||||| ||||||||||| | |||||| ||| || || ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||    
T  33314647 aaacaattcgctttgacttggagaaaattgttgaaagagagtgaaaattagtgcatgaatattataatattgacgcaacaccttgattatggtgtcccac 33314548  T
Q  124 atattcacaccacaccacgtctggacagctttaggacactctacaaggacatgaatgttgtcctcgtaattactatcacacg 205  Q
    |||||||||  || ||||  ||| ||| |||||||||| |||||||| ||||||||  | ||||| ||||||||||||||||    
T  33314547 atattcacattacgccacacctgaacaactttaggacattctacaagaacatgaatactatcctcataattactatcacacg 33314466  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 2113813 - 2113760
Alignment:
Q  45 agaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||||||||||    
T  2113813 agaaaattgctgcaaaagagtgaaaataagtgcatgtatattataatcttgacg 2113760  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 39285892 - 39285831
Alignment:
Q  45 agaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacgcaacacct 106  Q
    ||||| ||||||||||| ||||||||| ||||||||   |||||||||||||||||||||||    
T  39285892 agaaaattgctgcaaaatagtgaaaataagtgcatttccattataatcttgacgcaacacct 39285831  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 3601876 - 3601936
Alignment:
Q  45 agaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacgcaacacc 105  Q
    ||||| ||| ||||||||| ||||||| |||||||  ||||||||||||||||| ||||||    
T  3601876 agaaaattgttgcaaaagaatgaaaataagtgcatgtatattataatcttgacgaaacacc 3601936  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 49407672 - 49407802
Alignment:
Q  1 caaagaattcacattgtcgtaaaaaacatttcgctttgacctagagaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacgca 100  Q
    |||||| ||||||||||||| || |  |||| |||||||| | ||||||  || || ||| |||||||| ||||||||| ||||||||||||||| ||||    
T  49407672 caaagacttcacattgtcgtcaagacaattt-gctttgacatggagaaaaatgttgtaaaggagtgaaatttagtgcatgaatattataatcttggcgca 49407770  T
Q  101 acacctagattatggtatcccacatattcaca 132  Q
    |||||  ||||| ||| || ||||||||||||    
T  49407771 acaccctgattacggtgtctcacatattcaca 49407802  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1479843 - 1479937
Alignment:
Q  1 caaagaattcacattgtcgtaaaaaacatttcgctttgacctagagaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttg 95  Q
    |||||| | ||||||||||| | ||||| || |||||||  | |||||| ||| |||||||||||||||||||||| || |||||||||||||||    
T  1479843 caaagactccacattgtcgtcacaaacaattagctttgaattggagaaatttgttgcaaaagagtgaaaattagtgtatgaatattataatcttg 1479937  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 37837072 - 37837119
Alignment:
Q  51 ttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  37837072 ttgctgcaaaagagtgaaaatgagtgcatttatattataatcttgacg 37837119  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 9632278 - 9632331
Alignment:
Q  45 agaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    ||||| |||||||||||||| |||||| |||||||  |||||||||||||||||    
T  9632278 agaaaattgctgcaaaagagagaaaataagtgcatgtatattataatcttgacg 9632331  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 17284133 - 17284186
Alignment:
Q  45 agaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    ||||| ||| ||||||||||||||||| |||||||   ||||||||||||||||    
T  17284133 agaaaattgttgcaaaagagtgaaaataagtgcatgtgtattataatcttgacg 17284186  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 6859938 - 6859871
Alignment:
Q  12 cattgtcgtaaaaaacatttcgctttgacctagagaaagttgctgcaaaagagtgaaaattagtgcat 79  Q
    ||||||||| | ||||| || |||||||| | |||||| ||| |||||||||||||||||||||||||    
T  6859938 cattgtcgtcacaaacaatttgctttgacatggagaaaattgttgcaaaagagtgaaaattagtgcat 6859871  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 10347149 - 10347190
Alignment:
Q  55 tgcaaaagagtgaaaattagtgcattaatattataatcttga 96  Q
    ||||||||||||||||| |||||||  |||||||||||||||    
T  10347149 tgcaaaagagtgaaaataagtgcatggatattataatcttga 10347190  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 42436455 - 42436411
Alignment:
Q  54 ctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    ||||||||||||||| || || |||| ||||||||||||||||||    
T  42436455 ctgcaaaagagtgaatatgagagcatgaatattataatcttgacg 42436411  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 9809373 - 9809425
Alignment:
Q  46 gaaagttgctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    |||| ||||||||||| ||||||||| |||||||  ||||||||| |||||||    
T  9809373 gaaaattgctgcaaaatagtgaaaataagtgcatgtatattataaccttgacg 9809425  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 8704147 - 8704191
Alignment:
Q  54 ctgcaaaagagtgaaaattagtgcattaatattataatcttgacg 98  Q
    ||||||||||||||| || ||||||| ||||||||| ||||||||    
T  8704147 ctgcaaaagagtgaatatgagtgcatgaatattatagtcttgacg 8704191  T

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