View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_3 (Length: 519)
Name: NF19958_low_3
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 16062 - 16566
Alignment:
| Q |
1 |
ctttcttggtaagtaaggaggatacacccctagttcttggtggatcagggagtactgtgttgagaagatcaacgtgttgagtcgattcttcaatagatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16062 |
ctttcttggtaagtaaggaggatacacccctagttcttggtggatcagggagtaccgtgttgagaagatcaacgtgttgagtcgattcttcaatagatgt |
16161 |
T |
|
| Q |
101 |
gcctcgcatcaagcgaattgaacgacagaaatggagtactttcttgaagatcttatcctacaaagaaatccatgaattggaaaatgcattggtctctcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16162 |
gcctcgcatcaagcgaattgaacgacagaaatggagtactttcttgaagatcttatcctacaaagaaatccatgaattggaaaatgcattggtctctcaa |
16261 |
T |
|
| Q |
201 |
ggaaaatataggaaataagttatggaaaacacctgcatgatttcagctgcttcaagaaacctctggttggtgattagaatacaattggtgtaaccatggg |
300 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16262 |
ggaaaatataggaaataagccatggaaaactcctgcatgatttcagctgcttcaagaaacctctggttggtgattagaatacaaatggtgtaaccatggg |
16361 |
T |
|
| Q |
301 |
aggaaaaatcaccatcacctaggtaagaagccagtgttttccccaatgtacgtcggattttctccatttcacttaga-tttttgctcattaatacccaaa |
399 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
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| T |
16362 |
cagaaaaatcaccatcacctaggtaagaagctagtgttttccccaatgtacgtcggattttctccatttcacttagactttttcctctttaatacccaaa |
16461 |
T |
|
| Q |
400 |
aatactataaatccccccaaccgtaattaattatcattcgctaaaaaactccacgatacttaactactgttggtatcattcattctaaatttatttggtt |
499 |
Q |
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| T |
16462 |
aatactataaatccccccaacggtaattaattttcattcgctaaaaaactccacgacacttaactactgttggtatcattcattctaaatttatttggtt |
16561 |
T |
|
| Q |
500 |
aaata |
504 |
Q |
| |
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||||| |
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| T |
16562 |
aaata |
16566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 7691 - 8176
Alignment:
| Q |
1 |
ctttcttggtaagtaaggaggatacacccctagttcttggtggatcagggagtactgtgttgagaagatcaacgtgttgagtcgattcttcaatagatga |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
7691 |
ctttcttggtaagtaagggggatacacccctagttcttggtcgatcagggagtattatgttgagaagatcaatgtgttgagtcgattcttcactagatga |
7790 |
T |
|
| Q |
101 |
gcctcgcatcaagcgaattgaacgacagaaatggagtactttcttgaagatcttatcctacaaagaaatccatgaattggaaaatgcattggtctctcaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
7791 |
gcctcgcatcaagcgaattgaacgacagagatggagtactttcttgaagattttatcctacaaagaaatccacgagttggaaaatgcattggtctctcaa |
7890 |
T |
|
| Q |
201 |
ggaaaatataggaaataagttatggaaaacacctgcatgatttcagctgcttcaagaaacctctggttggtgattagaatacaattggtgtaaccatggg |
300 |
Q |
| |
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|| ||||||||| |||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
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|
| T |
7891 |
ggcaaatataggtaataagccattgaaaacacctgcgtgatttcagctgcttcaagaaacttctggttggtgattagaataaaaatggtgtaaccatggg |
7990 |
T |
|
| Q |
301 |
aggaaaaatcaccatcacctaggtaagaagccagtgttttccccaatgtacgtcggattttctccatttcacttagatttttgctcattaatacccaaaa |
400 |
Q |
| |
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|| ||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||| | ||||||||||||| |||||||| |||| |||||||| |
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|
| T |
7991 |
cggcaaaatcaccatcacctaggtaggaagttagtgttttccccaatatacgtcagattttgtgcatttcacttagacttttgctctttaacacccaaaa |
8090 |
T |
|
| Q |
401 |
atactataaatccccccaaccgtaattaattatcattcgctaaaaaactccacgatacttaactactgttggtatcattcattctaa |
487 |
Q |
| |
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|||||| |||| || ||||| || |||||| ||||||||||||||||| || || |||||| ||| |||||||||||||||||||| |
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|
| T |
8091 |
atacta-aaatgcctccaacgctacttaattttcattcgctaaaaaacttcatgacacttaagtaccgttggtatcattcattctaa |
8176 |
T |
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