View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_31 (Length: 216)
Name: NF19958_low_31
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_31 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 3998 - 4188
Alignment:
| Q |
10 |
agaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggggatcat |
109 |
Q |
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| T |
3998 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggg-atcat |
4096 |
T |
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| Q |
110 |
catacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtatttt |
201 |
Q |
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| T |
4097 |
catacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtatttt |
4188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 3619 - 3687
Alignment:
| Q |
20 |
atggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
87 |
Q |
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| T |
3619 |
atggaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
3687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 35774468 - 35774282
Alignment:
| Q |
24 |
aaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagctagaa------ctaatttgaggggatcatcatacaa |
116 |
Q |
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| T |
35774468 |
aaatgatggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaagaaagctagaaaagctactaatttgggtggatcatcatacaa |
35774369 |
T |
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| Q |
117 |
taatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtatttt |
201 |
Q |
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| T |
35774368 |
taatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatatttt |
35774282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 35848262 - 35848122
Alignment:
| Q |
11 |
gaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
103 |
Q |
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|||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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| T |
35848262 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
35848163 |
T |
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| Q |
104 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
144 |
Q |
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| T |
35848162 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 35865934 - 35865814
Alignment:
| Q |
10 |
agaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgagg |
102 |
Q |
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||||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | |
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| T |
35865934 |
agaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttggga |
35865835 |
T |
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| Q |
103 |
ggatcatcatacaataatttc |
123 |
Q |
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| T |
35865834 |
ggatcatcatacattaatttc |
35865814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 1 - 141
Alignment:
| Q |
11 |
gaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
103 |
Q |
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|||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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| T |
1 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
100 |
T |
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| Q |
104 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
144 |
Q |
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| T |
101 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 478 - 551
Alignment:
| Q |
16 |
tgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
88 |
Q |
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| T |
478 |
tgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 478 - 551
Alignment:
| Q |
16 |
tgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
88 |
Q |
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||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
478 |
tgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
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