View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_4 (Length: 507)
Name: NF19958_low_4
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 280 - 485
Target Start/End: Original strand, 36146135 - 36146340
Alignment:
| Q |
280 |
ggacaatatatcaaaagatcggtgcaatgtaacaacttagaaatatatataatttattgttccagttaggaatactgcatgagaaattcttgattgagcg |
379 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36146135 |
ggacaatatatcaaaagataggcgcaatgtaacaacttagaaatatatataatttattgttctagttaggaatactgcatgagaaattcttgattgagcg |
36146234 |
T |
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| Q |
380 |
agcacccaagaatctttcatattgcacaaactcactattaagtgatataagcaaacaaataaatacccaaatcaaccactaatataaacagtaacatctc |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36146235 |
agcacccaagaatctttcatattgcacaaactcactattaagtgatataagcaaacaaataaatacccaaatcaaccactaatataaacagtaacatctg |
36146334 |
T |
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| Q |
480 |
aacctc |
485 |
Q |
| |
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|||||| |
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| T |
36146335 |
aacctc |
36146340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 36145873 - 36146054
Alignment:
| Q |
18 |
aagatcaacgttcatcacctcaaaaaatgaataatcaaagttcatagattatttccatatgtctacgattatttttatagagttccataccaagatactt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36145873 |
aagatcaacgttcatcacctcaaaaaatgaataatcaaagttcatagattatttccatatgtctacgattatttttatagagttccataccaagatactt |
36145972 |
T |
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| Q |
118 |
ttacacagtttttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcgtgc |
199 |
Q |
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| T |
36145973 |
ttacacagtttttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcgtgc |
36146054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 426
Target Start/End: Original strand, 36074784 - 36074886
Alignment:
| Q |
320 |
aaatatatataatttattgttccagttaggaatactgcatgagaaattcttgattgagcgagcacccaagaatctttcatattgcacaaactcactatta |
419 |
Q |
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|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||| |
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| T |
36074784 |
aaatatatataattgattgttctagttaagaatactgcatgagaaattcttgattg-gggcgcacccaagaatctttcatattgc---aactcactatta |
36074879 |
T |
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| Q |
420 |
agtgata |
426 |
Q |
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||||||| |
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| T |
36074880 |
agtgata |
36074886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 36073683 - 36073754
Alignment:
| Q |
127 |
ttttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcgtg |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
36073683 |
ttttagatcagtcatcataaggttccaataagcttttaaaaacatgtaaggaaatattaaaagacatgcgtg |
36073754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 283 - 469
Target Start/End: Complemental strand, 26530996 - 26530812
Alignment:
| Q |
283 |
caatatatcaaaagatcggtgcaat--gtaacaacttagaaatatatataatttat-tgttccagttaggaatactgcatgagaaattcttgattgagcg |
379 |
Q |
| |
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|||||| | ||||||| |||||||| |||| |||||||||||||| |||||| | ||||| |||| ||||||||| |||||||||||||| ||||| |
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| T |
26530996 |
caatattttaaaagataggtgcaatatgtaataacttagaaatatacataattattctgttctagtttggaatactgtatgagaaattcttggctgagca |
26530897 |
T |
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| Q |
380 |
agcacccaagaatctttcatattgcacaaactcactattaagtgatataagcaaacaaataaatacccaaatcaaccactaatataaaca |
469 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26530896 |
c---cccaagaatctttcatattgcataaactcactattaagtgata--agcaaacaaataaatacccaaatcaaccactaacataaaca |
26530812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 26531295 - 26531218
Alignment:
| Q |
18 |
aagatcaacgttcatcacctcaaaaaa-tgaataatcaaagttcatagattatttccatatgtctacgattattttta |
94 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
26531295 |
aagatcaacgttcatcacctcaaaaaaattaataatcgaagttcatagattgtttccataagtctacgattactttta |
26531218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 26531154 - 26531087
Alignment:
| Q |
129 |
ttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcg |
196 |
Q |
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|||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
26531154 |
ttagatcagttattatagggttccaataagcttttaaaaacatgtaaggaaatattaaaagacatgcg |
26531087 |
T |
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