View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_6 (Length: 457)
Name: NF19958_low_6
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 172 - 328
Target Start/End: Complemental strand, 12654418 - 12654265
Alignment:
| Q |
172 |
aatgagatataggggaaaacaaagtagacaaactataaacaaaatggagccacaccatttctcaacatgcatttctctcttaacgtggtgaattaaggtt |
271 |
Q |
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| T |
12654418 |
aatgagatatagtggaaaacaaagtagacagactacaaacaaaatggagccacaccatttctcaacatgcatttctctcttaacgcggtgaattaaggtt |
12654319 |
T |
|
| Q |
272 |
tgaattacggtggaaatagttaataataatatttaatgttcgacaatatttgaatag |
328 |
Q |
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| T |
12654318 |
tgaattacggtggaaatagt---taacaatatttaatgtccgataatattttaatag |
12654265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 13359741 - 13359771
Alignment:
| Q |
70 |
atgtgtgaatctagtcactaaactatttgac |
100 |
Q |
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| T |
13359741 |
atgtgtgaatctagtcactaaactatttgac |
13359771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 4904625 - 4904592
Alignment:
| Q |
66 |
taatatgtgtgaatctagtcactaaactatttga |
99 |
Q |
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| T |
4904625 |
taatttgtgtgaatctagtcactaaactatttga |
4904592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 21023714 - 21023674
Alignment:
| Q |
60 |
cacacataatatgtgtgaatctagtcactaaactatttgac |
100 |
Q |
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| T |
21023714 |
cacacataatgtgtgtgaatcttgtcactagactatttgac |
21023674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 36786600 - 36786560
Alignment:
| Q |
60 |
cacacataatatgtgtgaatctagtcactaaactatttgac |
100 |
Q |
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| T |
36786600 |
cacacataatatgtgtgaatctagccactgaactatttgac |
36786560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 30327735 - 30327774
Alignment:
| Q |
60 |
cacacataatatgtgtgaatctagtcactaaactatttga |
99 |
Q |
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| T |
30327735 |
cacacataatatgtgtgaatctagccactaaactacttga |
30327774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 14368444 - 14368405
Alignment:
| Q |
60 |
cacacataatatgtgtgaatctagtcactaaactatttga |
99 |
Q |
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|
| T |
14368444 |
cacacataatgtgtgtgaatctagccactaaactatttga |
14368405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 20156984 - 20157024
Alignment:
| Q |
60 |
cacacataatatgtgtgaatctagtcactaaactatttgac |
100 |
Q |
| |
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|
| T |
20156984 |
cacacataatgtgtgtgaatctagacactaaactacttgac |
20157024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 24182691 - 24182634
Alignment:
| Q |
34 |
gttcgaatcttaaattctctactt-tacacacataatatgtgtgaatctagtcactaa |
90 |
Q |
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| T |
24182691 |
gttcgaatctcagattttctacttctccacacataatatctgtgaatctagtcactaa |
24182634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 1927617 - 1927657
Alignment:
| Q |
60 |
cacacataatatgtgtgaatctagtcactaaactatttgac |
100 |
Q |
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|||||||||| ||||||||||||||||| |||||| ||||| |
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| T |
1927617 |
cacacataatgtgtgtgaatctagtcaccaaactacttgac |
1927657 |
T |
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