View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_7 (Length: 396)
Name: NF19958_low_7
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Original strand, 33874498 - 33874864
Alignment:
| Q |
15 |
atcatcatcgggaatctgatagttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874498 |
atcatcatcgggaatctgatagttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatg |
33874597 |
T |
|
| Q |
115 |
acactgttctcattcgatgttctctcgactctaagttgattttcctcggattgccatgtagagaggtgacctcctgggattacgagttcctttctgtcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33874598 |
acactgttctcattcgatgttctctcgactctaagttgattttcctcggattgccatgtagagaggtgacctcctgggattacgagttcctttccgtcat |
33874697 |
T |
|
| Q |
215 |
aggagagtttaagatggtcaactttgtcatcccaaattgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaagaggactcccaatgcttgaat |
314 |
Q |
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|||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874698 |
aggagagtttcagatggtcaacttcgtcatcccaacttgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaagaggactcccaatgcttgaat |
33874797 |
T |
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| Q |
315 |
ccaagtataatcccttggtctccgttgcggcctaagaccgataaaacgagcattgatttgaaggttc |
381 |
Q |
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| T |
33874798 |
ccaagtataatcccttggtctccgctgcggcctaagaccgataaaacgagcattgatttgaaggttc |
33874864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 33878743 - 33879108
Alignment:
| Q |
15 |
atcatcatcgggaatctgatagttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatg |
114 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||| |
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| T |
33878743 |
atcatcatcaggaatctgataattatggattctactgtcctccttggtgacaggcaccacattgacagatatttctgcaacttccgggattgtgaccatg |
33878842 |
T |
|
| Q |
115 |
acactgttctcattcgatgttctctcgactctaagttgattttcctcggattgccatgtagagaggtgacctcctgggattacgagttcctttctgtcat |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| || || ||||||| |||| |
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| T |
33878843 |
acaccgttctcattcgatgttctctcgactctaagttgattttcctcggattgccacgtagagaggtgaccttcagggatcacaagatcctttccatcat |
33878942 |
T |
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| Q |
215 |
aggagagtttaagatggtcaactttgtcatcccaaattgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaagaggactcccaatgcttgaat |
314 |
Q |
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| T |
33878943 |
aagagagcttcaaatggtcaacttcgtcatcccaaattgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaataggactcccaatgcttgaat |
33879042 |
T |
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| Q |
315 |
ccaagtataatcccttggtctccgttgcggcctaagaccgataaaacgagcattgatttgaaggtt |
380 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33879043 |
ccaagtataatcccttggtctcccttgcggcctaaggccgataaaacgagcattgatttgaaggtt |
33879108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 22718336 - 22718388
Alignment:
| Q |
25 |
ggaatctgatagttatggattctactgtcctccttggtgacaggcaccacatt |
77 |
Q |
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||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| |
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| T |
22718336 |
ggaatttgatagttgtggattctactatcttccttagtgacaggcacaacatt |
22718388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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