View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19958_low_8 (Length: 381)
Name: NF19958_low_8
Description: NF19958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19958_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 7133189 - 7132837
Alignment:
| Q |
12 |
tattctgattaagtggcaggacgcgaatgcggctatttatattcatggttgttagctagaggatcgtttgaattggcttctggaggaagttaagctcgac |
111 |
Q |
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| T |
7133189 |
tattctgattgagtggcaggacgcgaatgcggctatttatattcatggttgttagctagaggatcatttgaattggcttctggaggaagttaagctcggc |
7133090 |
T |
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| Q |
112 |
atcaggtccattctactgccgtattcagagtttgttagtgatcaatataagtggccggcaaaaacaaatatgttaatagccttagactgaggcttcacag |
211 |
Q |
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| T |
7133089 |
atcaggtccattctactgccgtattcagagtttgttagtgatcaatataagtggccggaaaaaacaaatatgttaatagccttagactgaggctccacag |
7132990 |
T |
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| Q |
212 |
tgtttatatctaccttgttacttacataccatttcttcagcttcttcaagctcaattcgactaaatgtggctttagatttgcccaaattaattaaaagtc |
311 |
Q |
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| T |
7132989 |
tgtttatatctaccttgttacttacataccatttcttcagcttcttcaagctcaattcgactaaatgtggctttagatttgcccaaattaactaaaagtc |
7132890 |
T |
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| Q |
312 |
cgatagtcattcatgagcgaagaaaatgctaataatggtggcagtcacatttg |
364 |
Q |
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| T |
7132889 |
caatagtcattcatgagcgaagaaaatgctaataatggtggcagtcacatttg |
7132837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 7137588 - 7137462
Alignment:
| Q |
170 |
caaaaacaaatatgttaatagccttagactgaggcttcacagtgtttatatctaccttgttacttacataccatttcttcagcttcttcaagctcaattc |
269 |
Q |
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| T |
7137588 |
caaagacaaatacgttaataaccagagattgagactccacggtatttatatctaccttgtttc----atatcatttcttcagcttcttcaagctcaattt |
7137493 |
T |
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| Q |
270 |
gactaaatgtggctttagatttgcccaaatt |
300 |
Q |
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| T |
7137492 |
gactaaacgtggctttagatttgcccaaatt |
7137462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 7124686 - 7124594
Alignment:
| Q |
50 |
atattcatggttgttagctagaggatcgtttgaattggcttctggaggaagttaagctcgacatcaggtccattctactgccgtattcagagtt |
143 |
Q |
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| T |
7124686 |
atattgatggttgttggctaaaggatcgtttgaattggc-tccggaggaagtgaagctccatatcaggtccattgtactgccgcatacagagtt |
7124594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 7127885 - 7127827
Alignment:
| Q |
50 |
atattcatggttgttagctagaggatcgtttgaattggcttctggaggaagttaagctc |
108 |
Q |
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| T |
7127885 |
atattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctc |
7127827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 7136813 - 7136779
Alignment:
| Q |
330 |
gaagaaaatgctaataatggtggcagtcacatttg |
364 |
Q |
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| T |
7136813 |
gaagaaaatgccaataatggtggcagtcacatttg |
7136779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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