View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19959_high_1 (Length: 556)

Name: NF19959_high_1
Description: NF19959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19959_high_1
NF19959_high_1
[»] chr6 (8 HSPs)
chr6 (3-556)||(20621388-20621937)
chr6 (3-556)||(12057373-12057920)
chr6 (3-556)||(20590508-20591062)
chr6 (321-556)||(12053320-12053555)
chr6 (1-104)||(20632208-20632311)
chr6 (503-552)||(20632308-20632357)
chr6 (407-483)||(4601406-4601481)
chr6 (412-474)||(20430663-20430725)
[»] chr8 (5 HSPs)
chr8 (410-470)||(5788441-5788501)
chr8 (398-446)||(42939298-42939346)
chr8 (409-443)||(31087098-31087132)
chr8 (386-443)||(13068250-13068307)
chr8 (394-466)||(12506804-12506875)
[»] chr4 (1 HSPs)
chr4 (410-468)||(31938963-31939021)
[»] chr5 (3 HSPs)
chr5 (407-468)||(35403068-35403129)
chr5 (365-443)||(20869371-20869450)
chr5 (409-453)||(10319981-10320025)
[»] chr7 (4 HSPs)
chr7 (366-469)||(12171115-12171218)
chr7 (386-473)||(21439714-21439801)
chr7 (398-486)||(23701802-23701889)
chr7 (407-443)||(35035660-35035696)
[»] chr2 (2 HSPs)
chr2 (365-467)||(31807775-31807877)
chr2 (407-484)||(10302493-10302568)
[»] chr3 (2 HSPs)
chr3 (409-452)||(50037248-50037291)
chr3 (407-443)||(22926415-22926451)
[»] chr1 (3 HSPs)
chr1 (407-453)||(44529273-44529319)
chr1 (418-454)||(26761228-26761264)
chr1 (418-454)||(42724389-42724425)


Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 3 - 556
Target Start/End: Original strand, 20621388 - 20621937
Alignment:
Q  3 ccaattgcaaaatgaagggtcagaaccacgaaacaaaaattcaaattgatgagttagttacaatatatttgtatgtcaaacacccatttttcaatgaaat 102  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20621388 ccaattgcaaaataaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaatatgtttgtatgtcaaacacccatttttcaatgaaat 20621487  T
Q  103 ttaaaatgtcaaagcttccttcacaataaagctacaaaaacaaactctttcatcaaaccctcctttttgatcattatcaaaaccatttctttcattgtta 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20621488 ttaaaatgtcaaagcttccttcacaataaa-ctacaaaaacaaactctttcatcaaaccctccttt--gatcattatcaaaaccatttctttcattgtta 20621584  T
Q  203 tgtttcaaagagctcaaccattattcattccattttcttgttccttccccattaagctattggctacataaaaccacctttgatcattgttatgcaatta 302  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||    
T  20621585 tgtttcaaagagcttcaccattattcattccattttcttgttccttcctcattaagctattggctacataaa-ccacctttcatcattgttctgcaatta 20621683  T
Q  303 ttcatacccgtttcacagtcctctttctcttattctaatgctagccggtgccccggggacattggttaaggaagccagaaagaaaattttgagtcaaaat 402  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |||  |||||||||||||||||    
T  20621684 ttcatacccgtttcacattcctctttctcttattctcatgctagccggtgctccgggggcattggttaaggaagccaaaaaagaaattttgagtcaaaat 20621783  T
Q  403 tgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattcttttaaccagtgtccgagaacgctagttagc 502  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| || ||||||    
T  20621784 tgaaactttttaaacttttaatgtattgaatacacaacttttaatataaaatactactatatttgattattttaaccggtgtccgagaacactggttagc 20621883  T
Q  503 atttcccattctcttattgtaacaactgaggtacaggtgttctcttttccttct 556  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  20621884 atttcccattctcttattgcaacaactgaggtacatgtgttctcttttccttct 20621937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 3 - 556
Target Start/End: Complemental strand, 12057920 - 12057373
Alignment:
Q  3 ccaattgcaaaatgaagggtcagaaccacgaaacaaaaattcaaattgatgagttagttacaatatatttgtatgtcaaacacccatttttcaatgaaat 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12057920 ccaattgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaatatgtttgtatgtcaaacacccatttttcaatgaaat 12057821  T
Q  103 ttaaaatgtcaaagcttccttcacaataaagctacaaaaacaaactctttcatcaaaccctcctttttgatcattatcaaaaccatttctttcattgtta 202  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||     
T  12057820 ttaaaatgtcaaagcttcctttacattaaagctacaaaaacaaactctttcatctaaccctccttt--gatcattatcaaaaccatttcttttattgttc 12057723  T
Q  203 tgtttcaaagagctcaaccattattcattccattttcttgttccttccccattaagctattggctacataaaaccacctttgatcattgttatgcaatta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  12057722 tgtttcaaagagctcaaccattattcattccattttcttgttccttcctcattaagctattggctacataaaaccacgtttcatcattgttttgcaatta 12057623  T
Q  303 ttcatacccgtttcacagtcctctttctcttattctaatgctagccggtgccccggggacattggttaaggaagccagaaagaaaattttgagtcaaaat 402  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| | |||||| |||| |||||||||| ||||||| |||| |||||||||||||||||    
T  12057622 ttcatacccgtttcacattcctctttctcttattctcatgctagtctgtgcccagggg-cattggttaaagaagccaaaaaggaaattttgagtcaaaat 12057524  T
Q  403 tgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattcttttaaccagtgtccgagaacgctagttagc 502  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| ||||||||||    
T  12057523 tgaaactttttaaacttttaatgtattgaatacacaacttttaatacaaaatattactatatttgattcttttaaccagtatccgagaatgctagttagc 12057424  T
Q  503 atttcccattctcttattgtaacaactgaggtacaggtgttctcttttccttct 556  Q
    ||||   |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  12057423 attt---attctcttattgcaacaactgaggtacatgtgttctcttttccttct 12057373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 3 - 556
Target Start/End: Original strand, 20590508 - 20591062
Alignment:
Q  3 ccaattgcaaaatgaagggtcagaaccacgaaacaaaaattcaaattgatgagttagttacaatatatttgtatgtcaaacac--ccatttttcaatgaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  ||||||||| |||||    
T  20590508 ccaattgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgacgagttagttacaatatgtttgtatgtcaaacacacccatttttctatgaa 20590607  T
Q  101 atttaaaatgtcaaagcttccttcacaataaagctacaaaaacaaactctttcatcaaaccctcctttttgatcattatcaaaaccatttctttcattgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||| ||||||||||||||||||||    
T  20590608 atttaaaatgtcaaagcttccttcacaataaagctacaaaaacaaaccctttcatcaaaccctccttta--atcattataaaaaccatttctttcattgt 20590705  T
Q  201 tatgtttcaaagagctcaaccattattcattccattttcttgttccttccccattaagctattggctacataaaaccacctttgatcattgttatgcaat 300  Q
    | |||||||||||| |||||||| ||||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  20590706 tctgtttcaaagagttcaaccatgattcattccatgttcttgttccttcctcgttaagctactggctacataaaaccacctttcatcattgttctgcaat 20590805  T
Q  301 tattcatacccgtttcacagtcctctttctcttattctaatgctagccggtgccccggggacattggttaaggaagccagaaagaaaattttgagtcaaa 400  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||| || |||| |||||||||||||||    
T  20590806 tattcatacccgtttcacattcctctttctcttattctcatgctaaccggtgccccgggggcattggttaagaaagtcaaaaaggaaattttgagtcaaa 20590905  T
Q  401 attgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattcttttaaccagtgtccgagaacgctagtta 500  Q
    |||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||||||||| ||||| |||||||||||||| ||||    
T  20590906 attgaaacttgttaaacttttaatgtattgaatacacaactgttaatacaaaatactactatatatgattctttcaaccactgtccgagaacgctggtta 20591005  T
Q  501 gcatttcccattctcttattg-taacaactgaggtacaggtgttctcttttccttct 556  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  20591006 gcatttcccattctcttattgaaaacaactgaggtacaagtgttctcttttccttct 20591062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 321 - 556
Target Start/End: Complemental strand, 12053555 - 12053320
Alignment:
Q  321 tcctctttctcttattctaatgctagccggtgccccggggacattggttaaggaagccagaaagaaaattttgagtcaaaattgaaactttttaaacttt 420  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  12053555 tcctctttctcttattctcatgctagccggtgccccgagggcattggttaaggaagccagaaaggaaattttgagtcaaaattaaaactttttaaacttt 12053456  T
Q  421 taatgtattgaatacacaacttttaagataaaatactactatatttgattcttttaaccagtgtccgagaacgctagttagcatttcccattctcttatt 520  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12053455 taatgtattgaatacacaacttttaagacaaaatactactatatttgattattttaaccagtgtccaagaacgatggttagcatttcccattctcttatt 12053356  T
Q  521 gtaacaactgaggtacaggtgttctcttttccttct 556  Q
    | ||||||| ||||||||||||||||||||||||||    
T  12053355 gcaacaactaaggtacaggtgttctcttttccttct 12053320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 20632208 - 20632311
Alignment:
Q  1 aaccaattgcaaaatgaagggtcagaaccacgaaacaaaaattcaaattgatgagttagttacaatatatttgtatgtcaaacacccatttttcaatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20632208 aaccaattgcaaaatgaagggtcagaaccacgaaacaaaaattcaaattgatgagttagttacaatatatttgtatgtcaaacacccatttttcaatgaa 20632307  T
Q  101 attt 104  Q
    ||||    
T  20632308 attt 20632311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 20632308 - 20632357
Alignment:
Q  503 atttcccattctcttattgtaacaactgaggtacaggtgttctcttttcc 552  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  20632308 atttcccattctcttattgcaacaactgaggtacagttgttctcttttcc 20632357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 483
Target Start/End: Original strand, 4601406 - 4601481
Alignment:
Q  407 actttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattcttttaaccagtg 483  Q
    |||||||||| |||||||| ||||| ||||||||||| ||  ||||||| |||||||||| ||| ||||||||||||    
T  4601406 actttttaaatttttaatgcattgattacacaactttcaatgtaaaatattactatattttatt-ttttaaccagtg 4601481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 20430663 - 20430725
Alignment:
Q  412 ttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattcttt 474  Q
    |||| |||||| || ||||| ||||||| |||||| ||||||||||||||||||||| |||||    
T  20430663 ttaagcttttattgcattgattacacaatttttaatataaaatactactatatttgactcttt 20430725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 5788501 - 5788441
Alignment:
Q  410 ttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgatt 470  Q
    ||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  5788501 ttttaaatttttaatgcattgaatacacaacttttaatataaaatattactatatttgatt 5788441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 42939346 - 42939298
Alignment:
Q  398 aaaattgaaactttttaaacttttaatgtattgaatacacaacttttaa 446  Q
    |||| ||| ||||||||||||||||||| ||||| ||||||||||||||    
T  42939346 aaaaatgatactttttaaacttttaatgcattgactacacaacttttaa 42939298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 31087132 - 31087098
Alignment:
Q  409 tttttaaacttttaatgtattgaatacacaacttt 443  Q
    |||||||| ||||||||||||||||||||||||||    
T  31087132 tttttaaagttttaatgtattgaatacacaacttt 31087098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 13068250 - 13068307
Alignment:
Q  386 aaattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttt 443  Q
    ||||| ||||||||||  || ||||||||||||||||||  ||||| |||||||||||    
T  13068250 aaattgtgagtcaaaaaagacactttttaaacttttaatacattgattacacaacttt 13068307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 466
Target Start/End: Original strand, 12506804 - 12506875
Alignment:
Q  394 agtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatattt 466  Q
    ||||||||  || |||||||||| |||||||||||||| || |||||||| || | |||||| ||||||||||    
T  12506804 agtcaaaaaagacactttttaaatttttaatgtattgattatacaactttcaata-aaaatattactatattt 12506875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 31938963 - 31939021
Alignment:
Q  410 ttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttga 468  Q
    |||||||||||||||||||||| ||||||||||||||   ||||||||||||| |||||    
T  31938963 ttttaaacttttaatgtattgattacacaacttttaatgcaaaatactactatttttga 31939021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 35403129 - 35403068
Alignment:
Q  407 actttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttga 468  Q
    ||||||||||||||||||||| |||  |||||||||| || | |||||||||||||||||||    
T  35403129 actttttaaacttttaatgtaatgacaacacaactttcaatacaaaatactactatatttga 35403068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 443
Target Start/End: Complemental strand, 20869450 - 20869371
Alignment:
Q  365 tggttaaggaagccagaa-agaaaattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttt 443  Q
    ||||||||||||||| || |||||||||| | | |||| ||| ||||||||| ||||||||| ||||| |||||||||||    
T  20869450 tggttaaggaagccaaaagagaaaattttaatttaaaaatgacactttttaagcttttaatgcattgattacacaacttt 20869371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 10320025 - 10319981
Alignment:
Q  409 tttttaaacttttaatgtattgaatacacaacttttaagataaaa 453  Q
    |||||||| ||||||||| || |||||||||||||||||||||||    
T  10320025 tttttaaagttttaatgtgtttaatacacaacttttaagataaaa 10319981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 469
Target Start/End: Complemental strand, 12171218 - 12171115
Alignment:
Q  366 ggttaaggaagccagaaa-gaaaattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatat 464  Q
    |||||||||||| | ||| | ||||||| ||||||||   | |||||||||||||||| |||| |||  ||||||||||||| |||||| ||||||||||    
T  12171218 ggttaaggaagctaaaaatggaaattttaagtcaaaaagaacactttttaaactttta-tgtaatgacaacacaacttttaatataaaacactactatat 12171120  T
Q  465 ttgat 469  Q
    |||||    
T  12171119 ttgat 12171115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 21439714 - 21439801
Alignment:
Q  386 aaattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattctt 473  Q
    ||||||| ||||||||   | ||||||||||||||||||| | |||   ||||||||| || | ||||||||||||||||||| ||||    
T  21439714 aaattttaagtcaaaaagaacactttttaaacttttaatgcaatgacagcacaactttcaatacaaaatactactatatttgactctt 21439801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 486
Target Start/End: Complemental strand, 23701889 - 23701802
Alignment:
Q  398 aaaattgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattcttttaaccagtgtcc 486  Q
    |||| ||| |||||||||  |||||||| ||||| |||| | |||| ||  ||||||| |||||||||||||| | |||||||||||||    
T  23701889 aaaaatgacactttttaagtttttaatgcattgactacatagctttcaatgtaaaatattactatatttgatt-tcttaaccagtgtcc 23701802  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 35035660 - 35035696
Alignment:
Q  407 actttttaaacttttaatgtattgaatacacaacttt 443  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  35035660 actttttaagcttttaatgcattgaatacacaacttt 35035696  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 467
Target Start/End: Original strand, 31807775 - 31807877
Alignment:
Q  365 tggttaaggaagccagaaagaa--aattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttttaagataaaatactactat 462  Q
    ||||||||||||||| ||||||  |||| | ||||||||  || ||||||||| ||||||||| ||||| ||||||||||| || || ||||| ||||||    
T  31807775 tggttaaggaagcca-aaagaagaaattgtaagtcaaaaaagacactttttaagcttttaatgcattgattacacaactttcaacat-aaatattactat 31807872  T
Q  463 atttg 467  Q
    |||||    
T  31807873 atttg 31807877  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 10302493 - 10302568
Alignment:
Q  407 actttttaaacttttaatgtattgaatacacaacttttaagataaaatactactatatttgattcttttaaccagtgt 484  Q
    ||||||||| ||||||||| ||||| ||||||| ||| ||  |||| ||||| |||||||||||| ||||||||||||    
T  10302493 actttttaagcttttaatgcattgactacacaattttcaatgtaaa-tactattatatttgattc-tttaaccagtgt 10302568  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 452
Target Start/End: Original strand, 50037248 - 50037291
Alignment:
Q  409 tttttaaacttttaatgtattgaatacacaacttttaagataaa 452  Q
    |||||||  ||||||||| |||||||||||||||||||||||||    
T  50037248 tttttaatgttttaatgtgttgaatacacaacttttaagataaa 50037291  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 22926415 - 22926451
Alignment:
Q  407 actttttaaacttttaatgtattgaatacacaacttt 443  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  22926415 actttttaaacttttaatgcattgattacacaacttt 22926451  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 44529319 - 44529273
Alignment:
Q  407 actttttaaacttttaatgtattgaatacacaacttttaagataaaa 453  Q
    |||||||||  ||||||| | ||||||||||||||||||||||||||    
T  44529319 actttttaatgttttaatatgttgaatacacaacttttaagataaaa 44529273  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 26761228 - 26761264
Alignment:
Q  418 ttttaatgtattgaatacacaacttttaagataaaat 454  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  26761228 ttttaatgtgttgaatacacaaattttaagataaaat 26761264  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 42724425 - 42724389
Alignment:
Q  418 ttttaatgtattgaatacacaacttttaagataaaat 454  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  42724425 ttttaatgtgttgaatacacaatttttaagataaaat 42724389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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