View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19959_high_10 (Length: 228)
Name: NF19959_high_10
Description: NF19959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19959_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 27593575 - 27593477
Alignment:
| Q |
114 |
aacattttgaccatttcatttgaatttaattaactattgttatattttctcattagaacaaaatttacagtaaaatttattatatttgcagtaataaat |
212 |
Q |
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| T |
27593575 |
aacattttgaccatttcatttgaatttaatcaactattgttatattatctcattagaacaaaatttacagtaaaatttattatatttgcagtaataaat |
27593477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 36068260 - 36068351
Alignment:
| Q |
114 |
aacattttgaccatttcatttgaatttaattaactattgttatattttctcattagaacaaaatttacagtaaaatttattatatttgcagtaataaat |
212 |
Q |
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| T |
36068260 |
aacattttgaccatttcatttga------tcaactattgttacattttctcattagaacaaaattttca-taaaattacccatatttgcagtaataaat |
36068351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 35145509 - 35145553
Alignment:
| Q |
148 |
tattgttatattttctcattagaacaaaatttacagtaaaattta |
192 |
Q |
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| T |
35145509 |
tattgttatattttgtcattagaacaaaattttccgtaaaattta |
35145553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 53505821 - 53505720
Alignment:
| Q |
15 |
aagaagatgcaccaacaatctattcaagctaaattacacaataatatccatgcaagtgagcggatgtttccaccagtcgtgataacagtaactgaaagaa |
114 |
Q |
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| T |
53505821 |
aagatgatgcaccaacaatctattcaagctaaattacacagtaatacccatgcaagggagcagatgtttccaccagtcgtgataacagtaactgaaagaa |
53505722 |
T |
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| Q |
115 |
ac |
116 |
Q |
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|| |
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| T |
53505721 |
ac |
53505720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 39052300 - 39052204
Alignment:
| Q |
21 |
atgcaccaacaatctattcaagctaaattacacaataatatccatgcaagtgagcggatgtttccaccagtcgtgataacagtaactgaaagaaacat |
118 |
Q |
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| T |
39052300 |
atgcaccatcaatccaagcaagctaaattacacaataatacccatgcaag-gagcggatgtttccaccagtcgtgataattgtaactgaaagaaacat |
39052204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 9159312 - 9159372
Alignment:
| Q |
39 |
caagctaaattacacaataatatccatgcaagtgagcggatgtttccaccagtcgtgataa |
99 |
Q |
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| T |
9159312 |
caagctaaattacacaataatacccatacaagagagagaatgtttccaccagtcatgataa |
9159372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 13094863 - 13094915
Alignment:
| Q |
47 |
attacacaataatatccatgcaagtgagcggatgtttccaccagtcgtgataa |
99 |
Q |
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| T |
13094863 |
attacacaataacacccatgcaagggagtagatgtttccaccagtcatgataa |
13094915 |
T |
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