View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19959_high_4 (Length: 347)
Name: NF19959_high_4
Description: NF19959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19959_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 4141508 - 4141851
Alignment:
| Q |
1 |
aaatcgtcttgacattgggatcaatgtcaaatatagttgcatatattggtttttcaaggccctcccttaatgaagacgaagacctgtaaaatgtacaaca |
100 |
Q |
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| T |
4141508 |
aaatcgtcttgacattgggatcaatgtcaaatatagttgcatatattggtttttcaaggccctcccttaatgaagacgaagacctgtaaaatgtacaaca |
4141607 |
T |
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| Q |
101 |
taatttcatgagatctagtctttaatcacatactcattttcattgaaaaatgaaatgtatgcattgcagaatatgtttgaagagtacagtaaaaacaatt |
200 |
Q |
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| T |
4141608 |
taatttcatgagatctagtctttaatcacatactcattttcattgaaaaatgaaatgtatgcattgcagaatatgtttgaagagtacagtaaaaacaatt |
4141707 |
T |
|
| Q |
201 |
acctggtctggtcacttatcatcaagcatttatattcatcgctgactctatatattcggaaagatattgtagttctctctgtctggtcttctgatgctaa |
300 |
Q |
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| T |
4141708 |
acctggtctggtcacttatcatcaagcatttatattcatcgctgactctatatattcggaaagatattgtagttctctctgtctggtcttctgatgctaa |
4141807 |
T |
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| Q |
301 |
agcttgcaaaccaaatggccctatcatgccttttattgatgcat |
344 |
Q |
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| T |
4141808 |
agcttgcaaaccaaatggccctatcatgccttttattgatgcat |
4141851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 140 - 344
Target Start/End: Original strand, 4127970 - 4128170
Alignment:
| Q |
140 |
tcattgaaaaatgaaatgtatgcattgcagaatatgtttgaagagtacagtaaaaacaattacctggtctggtcacttatcatcaagcatttatattcat |
239 |
Q |
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| T |
4127970 |
tcattgaaaaatgaaatgtatgcactgcagaataagtttgaagagt---gtaaaaa-aataacctggtctggtcacttatcatcaaacatttataatgat |
4128065 |
T |
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| Q |
240 |
cgctgactctatatattcggaaagatattgtagttctctctgtctggtcttctgatgctaaagcttgcaaaccaaatggccctatcatgccttttattga |
339 |
Q |
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| T |
4128066 |
ccgcgactctatatatccggaaagatattgtagtcttctctgtctggtcttttgatgctaaggcttgcaaaccaaatggccctatcatgcattttcttga |
4128165 |
T |
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| Q |
340 |
tgcat |
344 |
Q |
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||||| |
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| T |
4128166 |
tgcat |
4128170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 201 - 344
Target Start/End: Original strand, 4136802 - 4136945
Alignment:
| Q |
201 |
acctggtctggtcacttatcatcaagcatttatattcatcgctgactctatatattcggaaagatattgtagttctctctgtctggtcttctgatgctaa |
300 |
Q |
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||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
4136802 |
acctggtctggtcacttatcatcaagcatttgaatccatcgccggctctatatattcggaaagatattgtagtcctctctgtttggtcttttgatgctaa |
4136901 |
T |
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| Q |
301 |
agcttgcaaaccaaatggccctatcatgccttttattgatgcat |
344 |
Q |
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| T |
4136902 |
agcttgcaaaccaaatggtcctatcatgccatttcttgatgcat |
4136945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 4136460 - 4136528
Alignment:
| Q |
9 |
ttgacattgggatcaatgtcaaatatagttgcatatattggtttttcaaggccctcccttaatgaagac |
77 |
Q |
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|||| |||||||||||||||||| |||||||||||| | |||||||| | |||||| ||||||||| |
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| T |
4136460 |
ttgagattgggatcaatgtcaaagatagttgcatatgaggttttttcaacgtcctcccgcaatgaagac |
4136528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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