View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19959_high_7 (Length: 239)
Name: NF19959_high_7
Description: NF19959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19959_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 48897845 - 48898055
Alignment:
| Q |
12 |
agaatatgggttttcattttagttgggggaatataatttagggaaagtgtagtatgaactaatggatctcaaattgatgatcaagaataactaatgtgtg |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48897845 |
agaaaatgggttttcattttagttgggggaatataatttagggaaagtgtagtatgaactaatggatctcaaattgatgatcaagaataactaatgtgtg |
48897944 |
T |
|
| Q |
112 |
tcactgtgcttttcgtggatccaaaaccataaaaatctacacatatgatcctatttcttccaagtacacacataagaattagcattattgtagtatatgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
48897945 |
tcactgtgcttttcgtggatccaaaaccataaaaatctacacatatgatcctatttcctccaagtacacgcataagaattagtattattgtagtatatgc |
48898044 |
T |
|
| Q |
212 |
tcagattttat |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
48898045 |
tcagattttat |
48898055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University