View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19959_low_2 (Length: 380)
Name: NF19959_low_2
Description: NF19959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19959_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 48863786 - 48864151
Alignment:
| Q |
15 |
atgaaggtgaaaatgagagaggaaaaggagatgatataaatcctagtaaaagagtgatgacgacaagataaaataacctcaagttttgttcaaaaaagaa |
114 |
Q |
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| T |
48863786 |
atgaaggtgaaaatgagagaggaaaaggagatgatataaatcctagtaaaagagtgataacgacaagataaaataacctcaagttttgttcaaaaaagaa |
48863885 |
T |
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| Q |
115 |
cataacattaagctgtagtcatgtccttaatattaaatgacaattcgatttataaacaacattcatgtattcaagtaagctaaacaaaactccttattgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48863886 |
cataacattaagctgtagtcatgtccttaatattaaatgacaattcgatttataaacaacattcatgtattcaagtaagctaaacaaaactccttattgt |
48863985 |
T |
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| Q |
215 |
cactagaggaacaattcagaaagtgcattagctagtagaggcaaaatacatcaggtggcagaataaactgacattcagccaaagacttaacttaaatatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48863986 |
cactagaggaacaattcagaaagtgcattagctagtagaggcaaaatacatcaggtggcagaataaactgacattcaaccaaagacttaacttaaatatt |
48864085 |
T |
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| Q |
315 |
aaatgaagcctctggattaatctggaacagatagattgttacaaatggattctcaatcaaatattt |
380 |
Q |
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| T |
48864086 |
aaatgaagcctctggattaatctggaacagatagattgttacaaatggattctcaatcaaatattt |
48864151 |
T |
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