View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19959_low_8 (Length: 236)
Name: NF19959_low_8
Description: NF19959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19959_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4141492 - 4141272
Alignment:
| Q |
1 |
tatgtttatgtcatcataattggtgttcattttttctttatcatatgcttgcaagtttgatatatatgaggtcttaaaatgcagattgaccggtcgatta |
100 |
Q |
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| T |
4141492 |
tatgtttatgtcatcataattggtgttcattttttctttatcatatgcttgcaagtttgatatatatgaggtcttaaaatgcagattgaccggtcgatta |
4141393 |
T |
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| Q |
101 |
ttgagagttttggggatggagggaaagttgtgataacaagtagagtttatcccttattggctatagagcaagatgcacatctttttgtattcaatgatgg |
200 |
Q |
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| T |
4141392 |
ttgagagttttggagatggagggaaagttgtgataacaagtagagtttatcccttattggctatagagaaagatgcacatctttttgtattcaatgatgg |
4141293 |
T |
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| Q |
201 |
aagtcagagtgtggttatctc |
221 |
Q |
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| T |
4141292 |
aagtcagagtgtggttatctc |
4141272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 4116483 - 4116326
Alignment:
| Q |
64 |
atatgaggtcttaaaatgcagattgaccggtcgattattgagagttttggggatggagggaaagttgtgataacaagtagagtttatcccttattggcta |
163 |
Q |
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| T |
4116483 |
atatgaggtgttaatatgcagattgacaagtccatcattgagagttttggagatggagggaaagctgtgataacaagtagagtttatcccttattggcta |
4116384 |
T |
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| Q |
164 |
tagagcaagatgcacatctttttgtattcaatgatggaagtcagagtgtggttatctc |
221 |
Q |
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| T |
4116383 |
tagaaaaagatgcacatctttatgtattcaacaatggaagtcagagtgtggttatctc |
4116326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 4136356 - 4136214
Alignment:
| Q |
79 |
atgcagattgaccggtcgattattgagagttttggggatggagggaaagttgtgataacaagtagagtttatcccttattggctatagagcaagatgcac |
178 |
Q |
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| T |
4136356 |
atgcagattgaccggtccattatagagagttttggagatggagggagagcttgcataacaagtagagcttatcccttatttgctacagataaagatgcac |
4136257 |
T |
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| Q |
179 |
atctttttgtattcaatgatggaagtcagagtgtggttatctc |
221 |
Q |
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| T |
4136256 |
atctttttgtattcaatgatggaagccaaagtgtggttatctc |
4136214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 4127431 - 4127296
Alignment:
| Q |
79 |
atgcagattgaccggtcgattattgagagttttggggatggagggaaagttgtgataacaagtagagtttatcccttattggctatagagcaagatgcac |
178 |
Q |
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| T |
4127431 |
atgcagattgaccggtccattattgagagttttggagatggagggaaagcttgcataacaaatagagtttatcccttattggctatagagaaatatgcac |
4127332 |
T |
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| Q |
179 |
atctttttgtattcaatgatggaagtcagagtgtgg |
214 |
Q |
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| T |
4127331 |
atctttatgtattcaacaatggaagccaaagtgtgg |
4127296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 4121674 - 4121601
Alignment:
| Q |
48 |
cttgcaagtttgatatatatgaggtcttaaaatgcagattgaccggtcgattattgagagttttggggatggag |
121 |
Q |
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||||| ||||||||||||||| ||| |||| |||||||| || ||||| | |||||||||||| |||| |||| |
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| T |
4121674 |
cttgctagtttgatatatatggggtgttaatatgcagatcgatcggtctacaattgagagtttttgggagggag |
4121601 |
T |
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