View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19959_low_9 (Length: 236)

Name: NF19959_low_9
Description: NF19959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19959_low_9
NF19959_low_9
[»] chr6 (7 HSPs)
chr6 (172-236)||(20632020-20632084)
chr6 (175-219)||(20609148-20609192)
chr6 (96-136)||(20631940-20631980)
chr6 (183-225)||(20609181-20609223)
chr6 (96-136)||(20609069-20609109)
chr6 (175-225)||(20599304-20599354)
chr6 (96-136)||(20599224-20599264)


Alignment Details
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 20632020 - 20632084
Alignment:
Q  172 atgtatgggtttaatatctaagtaatattttttgtataatttctaagtcattttataaacctcac 236  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20632020 atgtatgggtttaatatctaagtaatattttttgtataatttataagtcattttataaacctcac 20632084  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 20609148 - 20609192
Alignment:
Q  175 tatgggtttaatatctaagtaatattttttgtataatttctaagt 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  20609148 tatgggtttaatttctaagtaatattttttgtataatttctaagt 20609192  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 20631940 - 20631980
Alignment:
Q  96 ggtggtatatataggtgatgctccatgcataatcaaattat 136  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20631940 ggtggtatatataggtgatgctccatgcataatcaaattat 20631980  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 20609181 - 20609223
Alignment:
Q  183 taatatctaagtaatattttttgtataatttctaagtcatttt 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  20609181 taatttctaagtaatattttttgtataatttctaagtcatttt 20609223  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 20609069 - 20609109
Alignment:
Q  96 ggtggtatatataggtgatgctccatgcataatcaaattat 136  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  20609069 ggtggtatatataggtgatgctccatgcatcatcaaattat 20609109  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 20599304 - 20599354
Alignment:
Q  175 tatgggtttaatatctaagtaatattttttgtataatttctaagtcatttt 225  Q
    |||||||||||| || ||||||||||||||||| ||||||||||| |||||    
T  20599304 tatgggtttaatttccaagtaatattttttgtaaaatttctaagtaatttt 20599354  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 20599224 - 20599264
Alignment:
Q  96 ggtggtatatataggtgatgctccatgcataatcaaattat 136  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  20599224 ggtggtatatataggtgatgcttcatgcatcatcaaattat 20599264  T

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