View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1995_high_1 (Length: 406)
Name: NF1995_high_1
Description: NF1995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1995_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 48 - 377
Target Start/End: Original strand, 47560874 - 47561202
Alignment:
| Q |
48 |
cgattttgttgatggagattgatggacgaccaattgctgtaacataggtagcttgaatgggtcattgggtagtgaagatctcaaaaacccaaaacctcta |
147 |
Q |
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| T |
47560874 |
cgattttgttgatggagattgatggacgtcgaattgttgtaacataggtggcttgaatgggtcactgggtagtgaagatctcaaaaacccataacctcca |
47560973 |
T |
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| Q |
148 |
tgtttctctgtcagatgaaaatcaataaaaattaattgataa-cataaaaagggtctgtgtaaggttaagatgaaactaattgcagaaccatcaattgtg |
246 |
Q |
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| T |
47560974 |
tgtttctctgtcagatgaaaatcaataaaaattaattgataatcataaaaagggtttgtgtgaggttaagatgaaactaattgtagaaccatcaattatg |
47561073 |
T |
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| Q |
247 |
aattggtttatgaaaattttgaataataaagatgaatatgagatcattcaattttggggaaaaatgtgaaattagggattcaagaatcaagaatcattaa |
346 |
Q |
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| T |
47561074 |
aattggtttatgaaaattttgaataataaagatgaatatga-atcattcaattttgggg-aaaatgtcaaattaaggattcaagaatcaagaatcattaa |
47561171 |
T |
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| Q |
347 |
atttcagaaagtgttaaagcttggtgatggt |
377 |
Q |
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| T |
47561172 |
atttcagaaagtgttaaagcttggtggtggt |
47561202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 38406933 - 38406807
Alignment:
| Q |
140 |
aacctctatgtttctctgtcagatgaaaatcaataaaaattaattgataa-cataaaaagggtctgtgtaaggttaagatgaaactaattgcagaaccat |
238 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| || |||| ||||||||| |||||| ||||||| |
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| T |
38406933 |
aacctccatgtttctctgttagatgaaaatcaataaaaattaattgataaccatgaaaagggtctgcgtgaggtcaagatgaaattaattgtggaaccat |
38406834 |
T |
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| Q |
239 |
caattgtgaattggtttatgaaaattt |
265 |
Q |
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| T |
38406833 |
caattatgaattggtttatggaaattt |
38406807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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