View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19960_high_11 (Length: 221)

Name: NF19960_high_11
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19960_high_11
NF19960_high_11
[»] chr8 (12 HSPs)
chr8 (50-203)||(30224299-30224452)
chr8 (50-203)||(5567495-5567648)
chr8 (50-203)||(25249075-25249228)
chr8 (50-203)||(6428809-6428963)
chr8 (50-203)||(3375443-3375585)
chr8 (50-178)||(31032038-31032165)
chr8 (50-178)||(3379149-3379276)
chr8 (50-208)||(36535855-36535994)
chr8 (105-178)||(19473656-19473728)
chr8 (105-178)||(19544581-19544653)
chr8 (105-178)||(19588043-19588115)
chr8 (91-178)||(14939625-14939711)
[»] chr4 (11 HSPs)
chr4 (50-203)||(7040430-7040583)
chr4 (50-203)||(23564684-23564837)
chr4 (50-203)||(18656177-18656330)
chr4 (50-170)||(54296497-54296617)
chr4 (50-198)||(23566383-23566511)
chr4 (50-203)||(52520670-52520824)
chr4 (50-108)||(3529251-3529309)
chr4 (50-203)||(52518828-52518982)
chr4 (55-178)||(52545137-52545259)
chr4 (92-178)||(56074680-56074766)
chr4 (52-108)||(23985845-23985901)
[»] chr2 (4 HSPs)
chr2 (50-203)||(29758189-29758342)
chr2 (69-161)||(8759115-8759207)
chr2 (79-178)||(18612074-18612174)
chr2 (53-105)||(20516051-20516103)
[»] chr3 (3 HSPs)
chr3 (50-203)||(1140070-1140223)
chr3 (50-203)||(17402791-17402945)
chr3 (50-203)||(6789689-6789842)
[»] chr6 (14 HSPs)
chr6 (50-203)||(5376946-5377100)
chr6 (50-203)||(5378801-5378955)
chr6 (50-203)||(19645309-19645462)
chr6 (52-203)||(1088662-1088813)
chr6 (50-103)||(15868461-15868514)
chr6 (83-203)||(8915570-8915690)
chr6 (83-142)||(15149108-15149167)
chr6 (50-103)||(15866649-15866702)
chr6 (50-103)||(33866168-33866221)
chr6 (83-189)||(20985831-20985937)
chr6 (119-180)||(24544757-24544818)
chr6 (54-103)||(33869319-33869368)
chr6 (54-189)||(9415141-9415276)
chr6 (161-189)||(31528957-31528985)
[»] chr7 (11 HSPs)
chr7 (50-203)||(44963232-44963385)
chr7 (50-203)||(20046504-20046659)
chr7 (79-203)||(28014282-28014406)
chr7 (50-203)||(4895653-4895806)
chr7 (50-203)||(28124596-28124750)
chr7 (50-203)||(28126423-28126577)
chr7 (79-203)||(25471780-25471904)
chr7 (50-103)||(37405559-37405612)
chr7 (105-189)||(8405631-8405715)
chr7 (58-120)||(4880280-4880343)
chr7 (52-92)||(36989570-36989610)
[»] chr1 (8 HSPs)
chr1 (50-203)||(17449380-17449532)
chr1 (50-203)||(16808587-16808741)
chr1 (50-187)||(48941669-48941810)
chr1 (50-103)||(9312098-9312151)
chr1 (50-103)||(3282870-3282923)
chr1 (50-103)||(3284571-3284624)
chr1 (50-103)||(9310481-9310534)
chr1 (62-170)||(5924828-5924935)
[»] scaffold0057 (1 HSPs)
scaffold0057 (50-178)||(58855-58982)
[»] scaffold0189 (1 HSPs)
scaffold0189 (98-203)||(19063-19167)
[»] scaffold0251 (1 HSPs)
scaffold0251 (50-103)||(6295-6348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (55-162)||(39218-39325)
[»] chr5 (4 HSPs)
chr5 (55-151)||(25076176-25076273)
chr5 (55-151)||(25134145-25134242)
chr5 (50-103)||(39787168-39787221)
chr5 (105-176)||(20012959-20013029)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 30224299 - 30224452
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30224299 actcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 30224398  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30224399 atgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 30224452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 5567495 - 5567648
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5567495 actcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 5567594  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5567595 atgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 5567648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 25249075 - 25249228
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25249075 actcaaactaatctctatatataggaacactattgtactcattcatgatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 25249174  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  25249175 atgagtacccttatgcttgctatcttgcttacatatatgacttttctccctatg 25249228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 6428809 - 6428963
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttctacaatgagttactttgagtatctccc 147  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||  |  |||||||||| | |||||||||||| ||||||||||||| |    
T  6428809 actcaaactaatctctatatataggaacactattgtaatcattcatcatcttttaatcaaatctattcact-ctacaatgagtttctttgagtatctctc 6428907  T
Q  148 tcataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     ||| |||||||||||| |||||||||| |||||||||||||||| ||||| ||||    
T  6428908 acatgagtactcttatgtttgctatcttacttacatctatgacttctctccttatg 6428963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 3375585 - 3375443
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||          |||||||||||| |    
T  3375585 actcaaactaatctctatatataggaactctattgtacccattcattatct-ttttcaatctattcatttctacaa----------tgagtatctcccac 3375497  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || ||||||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  3375496 atgagtactcttttgcttgctatcttacttacatctatgacctttctccctatg 3375443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 31032165 - 31032038
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    ||||||||||||||||||||||||||||| || |  |||||||||| ||||||| |||||||||||| ||||| |||||||| || |||||||||||| |    
T  31032165 actcaaactaatctctatatataggaacattactacactcattcatgatcttttatcaatctattca-ttctataatgagtttctatgagtatctcccac 31032067  T
Q  150 ataagtactcttatgcttgctatcttgct 178  Q
    || |||||||||||||||||| |||||||    
T  31032066 atgagtactcttatgcttgctttcttgct 31032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 3379276 - 3379149
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||| || |||| |||||||||||| ||||| |||||||| || |||||||||||| |    
T  3379276 actcaaactaatctctatattaaggaaaactattgtactcattcatcattttttatcaatctattca-ttctataatgagtttctatgagtatctcccac 3379178  T
Q  150 ataagtactcttatgcttgctatcttgct 178  Q
    || |||||| |||| |||||| |||||||    
T  3379177 atgagtacttttatacttgctttcttgct 3379149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 36535994 - 36535855
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||| || ||| |||||||||||||| ||||||| |||||||||||||||| |                   |||||| |    
T  36535994 actcaaactaatctctatatatagcaatactgttgtactcattcatcatcttttatcaatctattcatttcaa-------------------tctcccac 36535914  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatgcttct 208  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  36535913 atgagtactcttatgcttgctatcttgcttacatctatgacctttctccctatgattct 36535855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 19473656 - 19473728
Alignment:
Q  105 tcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgct 178  Q
    |||||||||||||| ||| |||||||| || |||||||||||| ||| ||||||||||| |||||| |||||||    
T  19473656 tcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19473728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 19544581 - 19544653
Alignment:
Q  105 tcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgct 178  Q
    |||||||||||||| ||| |||||||| || |||||||||||| ||| ||||||||||| |||||| |||||||    
T  19544581 tcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 19588115 - 19588043
Alignment:
Q  105 tcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgct 178  Q
    |||||||||||||| ||| |||||||| || |||||||||||| ||| ||||||||||| |||||| |||||||    
T  19588115 tcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19588043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 14939625 - 14939711
Alignment:
Q  91 ttcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgct 178  Q
    ||||| ||||||| |||||||||||| ||||| |||||||| ||  |||||||| |  ||| ||||||| |||||||||| |||||||    
T  14939625 ttcatcatcttttatcaatctattca-ttctataatgagtttctacgagtatcttctacatgagtactcatatgcttgctttcttgct 14939711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 7040430 - 7040583
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7040430 actcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 7040529  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7040530 atgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 7040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 23564837 - 23564684
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23564837 actcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 23564738  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23564737 atgagtactcttatgcttgctattttgcttacatctatgacttttctccctatg 23564684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 18656177 - 18656330
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18656177 actcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 18656276  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18656277 atgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 18656330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 54296497 - 54296617
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt-ttcaatctattcatttctacaatgagttactttgagtatctccct 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||| |||||||| || |||||||| || |||||||||||||    
T  54296497 actcaaactaatctctatatataggaacactattgtactcattcatgatcttttaatcaatcaattcattt-tataatgagtttctatgagtatctccct 54296595  T
Q  149 cataagtactcttatgcttgct 170  Q
    ||| ||||||||||||||||||    
T  54296596 catcagtactcttatgcttgct 54296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 23566511 - 23566383
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                    |||||||||||||||||    
T  23566511 actcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatcta--------------------ctttgagtatctccctc 23566432  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctcc 198  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  23566431 atgggtactcttatgcttgctatcttgcttacatctatgacttttctcc 23566383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 52520670 - 52520824
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttctacaatgagttactttgagtatctccc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |  ||| | |||||||| |  |||  |  || ||||||||||||    
T  52520670 actcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaaatattttcatttc-aatatggatctctatgagtatctccc 52520768  T
Q  148 tcataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     ||| |||||||||||||||||| |||| |||||||||||||  ||||||||||||    
T  52520769 acatgagtactcttatgcttgctctctttcttacatctatgatctttctccctatg 52520824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 3529309 - 3529251
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3529309 actcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaa 3529251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 52518828 - 52518982
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttctacaatgagttactttgagtatctccc 147  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||  |  ||| | |||||| | | |  ||  | || ||||||||||||    
T  52518828 actcaaactaatctctatatataggaacactgttgtactcaatcatcatcttttaatcaaatattttcattccaatatggatct-ctatgagtatctccc 52518926  T
Q  148 tcataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     ||| ||| |||||||||||||| ||||||||||||||||||  ||||||||||||    
T  52518927 acatgagttctcttatgcttgctctcttgcttacatctatgatctttctccctatg 52518982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 52545259 - 52545137
Alignment:
Q  55 aactaatctctatatataggaacactattgtactcattc-attatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataa 153  Q
    |||||| |||||||||||||||||||  |||| |||||  |||||||||| |||||||||||||| ||| |||||||| || |||||||||||| ||| |    
T  52545259 aactaaactctatatataggaacactcatgta-tcattttattatcttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatga 52545162  T
Q  154 gtactcttatgcttgctatcttgct 178  Q
    ||||||||||||| ||| |||||||    
T  52545161 gtactcttatgctcgctttcttgct 52545137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 56074766 - 56074680
Alignment:
Q  92 tcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgct 178  Q
    |||| ||||||| ||| |||||||||||||| || ||||| || |||||||||||| ||| |||||||||||||||||| |||||||    
T  56074766 tcatcatcttttatcattctattcatttctataacgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 56074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 23985845 - 23985901
Alignment:
Q  52 tcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  23985845 tcaaactaatctctatatataggaacactattgtactcattcaccatcttttatcaa 23985901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 29758189 - 29758342
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29758189 actcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 29758288  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29758289 atgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 29758342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 8759207 - 8759115
Alignment:
Q  69 tataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactctt 161  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  8759207 tataggaacactattgtactcattcatcatcttttatcaatctgttcatttctacaatgagtttctttgagtatctccctcatgagtactctt 8759115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 18612174 - 18612074
Alignment:
Q  79 ctattgtactcattcattat-cttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgc 177  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||  | | | |||||||| ||| |||||||||||||||||| ||||||    
T  18612174 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctcccacatgagtactcttatgcttgctttcttgc 18612075  T
Q  178 t 178  Q
    |    
T  18612074 t 18612074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 20516103 - 20516051
Alignment:
Q  53 caaactaatctctatatataggaacactattgtactcattcattatctttttt 105  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||    
T  20516103 caaactaatttttatatataagaacactattgtactcattcattatttttttt 20516051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 1140070 - 1140223
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1140070 actcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctc 1140169  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1140170 atgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 1140223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 17402945 - 17402791
Alignment:
Q  50 actcaaactaatctct-atatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccct 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||||||     
T  17402945 actcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcatttctacaatgagtttctatgagtatctccca 17402846  T
Q  149 cataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17402845 catgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 17402791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 6789689 - 6789842
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| |    
T  6789689 actcaaactaatctctatatataggaatactattgtactcattcactatcttttttcaatctattca-ttctacaatgagtttctatgagtatctcccac 6789787  T
Q  150 ataagtactcttatgcttgctatc-ttgcttacatctatgacttttctccctatg 203  Q
    || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  6789788 atgagtactcttatgcttgctatctttgcttacatctatgacttctctccctatg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 5376946 - 5377100
Alignment:
Q  50 actcaaactaatctct-atatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccct 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||||||     
T  5376946 actcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcatttctacaatgagtttctatgagtatctccca 5377045  T
Q  149 cataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5377046 catgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 5377100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 5378801 - 5378955
Alignment:
Q  50 actcaaactaatctct-atatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccct 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||||||     
T  5378801 actcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcatttctacaatgagtttctatgagtatctccca 5378900  T
Q  149 cataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5378901 catgagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 5378955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 19645462 - 19645309
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||||||||||||||    
T  19645462 actcaaactaatctctatatataagaacactattgtactcattcattatcttttatcaatctatttatttctacaatgaatttctttgagtatctccctc 19645363  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  19645362 atgagtactcttatacttgctatcttggttacatctatgacttttctccctatg 19645309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 1088813 - 1088662
Alignment:
Q  52 tcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttac-tttgagtatctccctca 150  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| | ||||||||||||||  |    
T  1088813 tcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattca-ttctataatgagtttcttttgagtatctcccata 1088715  T
Q  151 taagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    | |||||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  1088714 tgagtactcttatgtttgctatcttgcttacatctatgacttctcttcctatg 1088662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 15868461 - 15868514
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868461 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 15868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 8915570 - 8915690
Alignment:
Q  83 tgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgcttaca 182  Q
    |||||||||| |  ||||||| | |||||||||||||||| ||| |||| || ||||||||| || ||  |||||||||||||||||| |||||||||||    
T  8915570 tgtactcatttagcatcttttattaatctattcatttctataataagtttctatgagtatcttccacacgagtactcttatgcttgctctcttgcttaca 8915669  T
Q  183 tctatgacttttctccctatg 203  Q
    ||||||| |||| || |||||    
T  8915670 tctatgatttttatctctatg 8915690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 15149167 - 15149108
Alignment:
Q  83 tgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtat 142  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  15149167 tgtactcattcattatcttttatcaatctattcatttctacaatgagtttctttgagtat 15149108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 15866649 - 15866702
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15866649 actcaaactaatctctatatttaggaacactattgtactcattcattatctttt 15866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 33866168 - 33866221
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33866168 actcagactaatctctatatataggaacactattgtactcattcactatctttt 33866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 20985937 - 20985831
Alignment:
Q  83 tgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgcttaca 182  Q
    ||||||||||   |||||||| |||||||||||||||||| ||||| ||  | | ||||||| || ||| ||||||||||||||||| | |||| |||||    
T  20985937 tgtactcatttgctatcttttatcaatctattcatttctataatgaatttttataagtatctaccacatgagtactcttatgcttgcaaacttgattaca 20985838  T
Q  183 tctatga 189  Q
    |||||||    
T  20985837 tctatga 20985831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 24544757 - 24544818
Alignment:
Q  119 tctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgctta 180  Q
    ||||| ||||||| || |||||||||||||||| |||||||||||||||||| |||||||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgctta 24544818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 33869319 - 33869368
Alignment:
Q  54 aaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  33869319 aaactaatctctatatataggaacactattgtacgcattcactatctttt 33869368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 9415141 - 9415276
Alignment:
Q  54 aaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttctacaatgagttactttgagtatctccctcat 151  Q
    ||||||||||||||||||| ||||||||||||||||  |  | |||||||  |  |||||| ||| |||||||||||||| || |||||||||||| |||    
T  9415141 aaactaatctctatatataagaacactattgtactctctagtcatcttttaatcaaatcta-tca-ttctacaatgagtttctatgagtatctcccacat 9415238  T
Q  152 aagtactcttatgcttgctatcttgcttacatctatga 189  Q
     |||||||||||| ||| | | ||| |||||| |||||    
T  9415239 gagtactcttatgtttgttcttttgtttacatttatga 9415276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 31528957 - 31528985
Alignment:
Q  161 tatgcttgctatcttgcttacatctatga 189  Q
    |||||||||||||||||||||||||||||    
T  31528957 tatgcttgctatcttgcttacatctatga 31528985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 44963232 - 44963385
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||||    
T  44963232 actcaaattaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaatgaatttctttgagtatctccctc 44963331  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || | ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44963332 atgaatactcttatgcttgctatcttacttacatctatgacttttctccctatg 44963385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 20046659 - 20046504
Alignment:
Q  50 actcaaactaatctct-atatataggaacactattgtactcattcattatcttttt-tcaatctattcatttctacaatgagttactttgagtatctccc 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  20046659 actcaaactaatctcttatatataggaacactattgtactcattcaatatctttttatcaatctattcatttctacaatgagtttctatgagtatctccc 20046560  T
Q  148 tcataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20046559 acatgagtactcttatgcttgctatctcgcttacatctatgacttttctccctatg 20046504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 28014406 - 28014282
Alignment:
Q  79 ctattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgct 178  Q
    ||||||||||||||  | ||||||| ||||||||||||||||||||||||||| || |||||||||||| ||| || |||||||||||||||||||||||    
T  28014406 ctattgtactcattattcatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgct 28014307  T
Q  179 tacatctatgacttttctccctatg 203  Q
    |||||||||||  ||||||||||||    
T  28014306 tacatctatgatctttctccctatg 28014282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 4895653 - 4895806
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt-ttcaatctattcatttctacaatgagttactttgagtatctccct 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||| |||||| ||| |  |||  |  || ||||||||||||     
T  4895653 actcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaatatattca-ttccaatatggatctctatgagtatctccca 4895751  T
Q  149 cataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     || |||||||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  4895752 gatgagtactcttatgtttgctctcttgcttacatctatgatctttctccctatg 4895806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 28124750 - 28124596
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttctacaatgagttactttgagtatctccc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |  ||| | |||| ||| |  |||  |  || ||||||||||||    
T  28124750 actcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaaatattttca-ttccaatatggatctctatgagtatctccc 28124652  T
Q  148 tcataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     ||| |||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  28124651 acatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 28124596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 28126577 - 28126423
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttctacaatgagttactttgagtatctccc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |  ||| | |||| ||| |  |||  |  || ||||||||||||    
T  28126577 actcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaaatattttca-ttccaatatggatctctatgagtatctccc 28126479  T
Q  148 tcataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     ||| |||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  28126478 acatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 28126423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 25471904 - 25471780
Alignment:
Q  79 ctattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgct 178  Q
    ||||||||||||||  | ||||||| ||||||||||||||| || |||||||| || | |||||||||| | | | || |||||||||||||||||| ||    
T  25471904 ctattgtactcattattcatcttttatcaatctattcatttatataatgagtttctattagtatctcccacgtgaataatcttatgcttgctatctttct 25471805  T
Q  179 tacatctatgacttttctccctatg 203  Q
    |||||||||||  ||||||| ||||    
T  25471804 tacatctatgatctttctccttatg 25471780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 37405612 - 37405559
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37405612 actcaaactaatctctatatataggaacactattgtactcattcactatctttt 37405559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 8405631 - 8405715
Alignment:
Q  105 tcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgcttacatctatga 189  Q
    |||||||| |||||||||||||||||| ||  || |||||||| ||| | |||||||||||||||||| |||||||||| |||||    
T  8405631 tcaatctagtcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttacatatatga 8405715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 4880280 - 4880343
Alignment:
Q  58 taatctctatatataggaacactattgtactcattcattatcttttttcaatct-attcatttc 120  Q
    ||||||| ||||||| |||||| ||| ||||||||||| ||||||| ||||||| |||||||||    
T  4880280 taatctcgatatatatgaacaccattatactcattcatcatcttttatcaatctaattcatttc 4880343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 36989610 - 36989570
Alignment:
Q  52 tcaaactaatctctatatataggaacactattgtactcatt 92  Q
    |||||||||||||||||||||| |||| ||||||| |||||    
T  36989610 tcaaactaatctctatatatagaaacattattgtagtcatt 36989570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 17449380 - 17449532
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | || |||||||||||| |    
T  17449380 actcaaactaatctctatatataggaacactattgtactcattcattatctttt-tcaatctattcatgtctacaatgagattctatgagtatctcccac 17449478  T
Q  150 ataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
    || ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  17449479 atgagtactcttttgcttgctatcttgcttacatctatgacctttctccctatg 17449532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 16808741 - 16808587
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttctacaatgagttactttgagtatctccc 147  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||  |  ||| | |||| ||| |  |||  |  || |||||||||||     
T  16808741 actcaaactaatctctatatatatgaacactattgtactcattcatcatcttttaatcaaatattttca-ttccaatatggatctctatgagtatctccg 16808643  T
Q  148 tcataagtactcttatgcttgctatcttgcttacatctatgacttttctccctatg 203  Q
     ||| |||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  16808642 acatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 16808587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 48941669 - 48941810
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt--ttcaatctattcatttc--tacaatgagttactttgagtatctc 145  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| ||||||||  |  ||||||||||||||  || ||||||||  | ||||||||||    
T  48941669 actcaaactaatctctatacatataaacactattgtactcattcagtatcttttaatcaaatctattcatttctatataatgagtttatatgagtatctc 48941768  T
Q  146 cctcataagtactcttatgcttgctatcttgcttacatctat 187  Q
     | ||| | ||||||||| |||||| ||||||||||||||||    
T  48941769 tcacatgaatactcttatacttgctctcttgcttacatctat 48941810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 9312098 - 9312151
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9312098 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 9312151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 3282870 - 3282923
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3282870 actcaaactaatctctatatataggaacactattgtactcattcactatctttt 3282923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 3284571 - 3284624
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3284571 actcaaactaatctctatatataggaacactattgtactcattcactatctttt 3284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 9310481 - 9310534
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  9310481 actcaaattaatatctatatataggaacactattgtactcattcattatctttt 9310534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 5924935 - 5924828
Alignment:
Q  62 ctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactctt 161  Q
    ||||||||||| |||||||  |||| |  ||||| ||||||| |||||||||||| ||||| |||||||| || |||||||||||   || | |||||||    
T  5924935 ctctatatataagaacactcgtgtattatttcatcatcttttatcaatctattca-ttctataatgagtttctatgagtatctcctatatgaatactctt 5924837  T
Q  162 atgcttgct 170  Q
    |||||||||    
T  5924836 atgcttgct 5924828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 58855 - 58982
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| || |||||||||||| |    
T  58855 actcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattca-ttctataatgagtttctatgagtatctcccac 58953  T
Q  150 ataagtactcttatgcttgctatcttgct 178  Q
    || |||||||||||||||||| |||||||    
T  58954 atgagtactcttatgcttgctttcttgct 58982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 19063 - 19167
Alignment:
Q  98 tcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttgcttacatctatgacttttctc 197  Q
    |||||| |||||||||||||| ||| |||||||| || |||| ||||||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||    
T  19063 tcttttatcaatctattcatt-ctataatgagtttctatgagcatctcccacatgagtactcctatgctttctatcttgcttacatctatgatttttctc 19161  T
Q  198 cctatg 203  Q
    ||||||    
T  19162 cctatg 19167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 6295 - 6348
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6295 actcaaactaatctctatatataggaacactattgtactcattcactatctttt 6348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 39218 - 39325
Alignment:
Q  55 aactaatctctatatataggaacactattgtactcatt-cattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcataa 153  Q
    |||||| |||||||||||||||||||  |||| ||||| ||| ||||||| |||||||||||||||||| ||||||||  | |||||||||||| ||| |    
T  39218 aactaaactctatatataggaacactcatgta-tcatttcatcatcttttatcaatctattcatttctataatgagtttttatgagtatctcccacatga 39316  T
Q  154 gtactctta 162  Q
    |||||||||    
T  39317 gtactctta 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 25076273 - 25076176
Alignment:
Q  55 aactaatctctatatataggaaca-ctattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcat 151  Q
    |||||||||||| ||||||||||| | ||||||||| ||||| ||||||| ||||| |||||||||||| |||||||| || ||| |||||| |||||    
T  25076273 aactaatctctagatataggaacaacaattgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcat 25076176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 25134242 - 25134145
Alignment:
Q  55 aactaatctctatatataggaaca-ctattgtactcattcattatcttttttcaatctattcatttctacaatgagttactttgagtatctccctcat 151  Q
    |||||||||||| ||||||||||| | ||||||||| ||||| ||||||| ||||| |||||||||||| |||||||| || ||| |||||| |||||    
T  25134242 aactaatctctagatataggaacaacaattgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcat 25134145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 39787221 - 39787168
Alignment:
Q  50 actcaaactaatctctatatataggaacactattgtactcattcattatctttt 103  Q
    |||||||||||||||||||||||||||||||||| |||||||||| | ||||||    
T  39787221 actcaaactaatctctatatataggaacactattttactcattcactgtctttt 39787168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 20013029 - 20012959
Alignment:
Q  105 tcaatctattcatttctacaatgagttactttgagtatctccctcataagtactcttatgcttgctatcttg 176  Q
    |||||| ||||||| ||| |||||||| || |||||||||||| ||| |||||||||||||||||| |||||    
T  20013029 tcaatcaattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttg 20012959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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