View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19960_high_9 (Length: 259)
Name: NF19960_high_9
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19960_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 4164502 - 4164733
Alignment:
| Q |
10 |
aggagcagagaaagtatggtttaaatctgaggcaagttatgttttagtccttaatttgtgggtgatcaatctaacattttctcacatctgcctactaact |
109 |
Q |
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| T |
4164502 |
aggatcagagaaagtatggtttaaatctgaagcaagttatgttttagtccttaatttgtgggtgatcaatctaacattttctcacatctgcctactaact |
4164601 |
T |
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| Q |
110 |
atgagaatcaagagagggacaattagccacataaataaaagagatgaagaccatttcaaaggcgccgtctgtaaatttataaagttaaaatattcattcc |
209 |
Q |
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| T |
4164602 |
atatgaatcaagagagggacaattagccacataaataaaagagatgaagaccatttcaaaggcgccgtctgtaaatttttaaagttaaaatattcattcc |
4164701 |
T |
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| Q |
210 |
aatagaatagaaaatatagaaagtccacaaaa |
241 |
Q |
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| T |
4164702 |
aatagaatagaaaatatagaaagtccacaaaa |
4164733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 4155340 - 4155408
Alignment:
| Q |
139 |
cataaataaaagagatgaagaccatttcaaaggcgccgtctgtaaatttataaagttaaaatattcattcc |
209 |
Q |
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| T |
4155340 |
cataaatcaaagagacgaagaccatttcaaaggcaccatc--tacatttataaaattaaaatattcattcc |
4155408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 4136355 - 4136409
Alignment:
| Q |
139 |
cataaataaaagagatgaagaccatttcaaaggcgccgtctgtaaatttataaag |
193 |
Q |
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| T |
4136355 |
cataaatcaaagagacgaagactatttcaaatgtgccatctgtaaatttataaag |
4136409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 4126008 - 4126036
Alignment:
| Q |
184 |
atttataaagttaaaatattcattccaat |
212 |
Q |
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| T |
4126008 |
atttataaagttaaaatattcattccaat |
4126036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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