View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19960_low_10 (Length: 229)
Name: NF19960_low_10
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19960_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 15124110 - 15123912
Alignment:
| Q |
18 |
acaatatagaagaaggaaatgtacaagccattgtacaatatcaaaagtatcaatgacatgattttttaacagaatttcaatgttgattgatgaaaccaat |
117 |
Q |
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| T |
15124110 |
acaatatagaagaaggaaatatacaagccactgtacaatatcaaaagtttcaatgacatgattttttaacagaatttcaatgttgagagatgaaaccaat |
15124011 |
T |
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| Q |
118 |
atacaagaagaaagccaccatatagagtttaatattctaaccaatttgattctttgaacaatcaatgaaacagcaaaagaaatccaaatgaatcctttg |
216 |
Q |
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| T |
15124010 |
atacaagaagaaagccaccatatagagtttaatattctaaccaatttgattctttgaacaatcaatgaaacagcaaaagaaatccaaatgaatcctttg |
15123912 |
T |
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Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 5292237 - 5292431
Alignment:
| Q |
18 |
acaatatagaagaaggaaatgtacaagccattgtacaatatcaaaagtatcaatgacatgattttttaacagaatttcaatgttgattgatgaaaccaat |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
5292237 |
acaatatagaagaaggaaatgtacaagccactgtacaatatcaaatgtttcaattgcatgatttcttaacagaatttcaatgttgagagatgaaaccaat |
5292336 |
T |
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| Q |
118 |
atacaagaagaaagccaccatatagagtttaatattctaaccaatttgattctttgaacaatcaatgaaacagcaaaagaaatccaaatgaatcc |
212 |
Q |
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| T |
5292337 |
acacaagaaaatgtccaccatatagagattaatatcctaatccatttgactctttgaacgatcaaggaaacagacaaagaaatccaaatcaatcc |
5292431 |
T |
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