View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19960_low_2 (Length: 597)
Name: NF19960_low_2
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19960_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Complemental strand, 42393898 - 42393321
Alignment:
| Q |
1 |
ctcctggtatgctacctttgttacacatttatgttttgcgtcttctcacttcnnnnnnnngcggtatatggtttgtttaactctgattcaaatgaaaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
42393898 |
ctcctggtatgctacctttgttacacatttatgtttagcgtcttctcactt---ttttttgcggtatatggtttgtttaactctgattcaaattaaaatt |
42393802 |
T |
|
| Q |
101 |
tatttgagaatgctaacatgtgccctaaggcgcgtgttgaagaacttaataccattgagtttgtatgaacaagacatggtacttggtggatcagacacat |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42393801 |
tatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaataccattgagtttgtatgaacaggacatggtacttggtggatcagacacat |
42393702 |
T |
|
| Q |
201 |
cctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggttgggaaagataa |
300 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42393701 |
cctccaataccgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataa |
42393602 |
T |
|
| Q |
301 |
cttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42393601 |
cttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgtctcat |
42393502 |
T |
|
| Q |
401 |
tgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttggg |
500 |
Q |
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| T |
42393501 |
tgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttggg |
42393402 |
T |
|
| Q |
501 |
agaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccct |
581 |
Q |
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| T |
42393401 |
agaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgacttcaattatttcccct |
42393321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 168 - 579
Target Start/End: Complemental strand, 42377182 - 42376771
Alignment:
| Q |
168 |
aacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttca |
267 |
Q |
| |
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|||| ||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||| |
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| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttca |
42377083 |
T |
|
| Q |
268 |
agaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgt |
367 |
Q |
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| T |
42377082 |
agaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgt |
42376983 |
T |
|
| Q |
368 |
ttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacg |
467 |
Q |
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|| ||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||| |
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| T |
42376982 |
ttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacg |
42376883 |
T |
|
| Q |
468 |
tttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactt |
567 |
Q |
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|||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42376882 |
tttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgactt |
42376783 |
T |
|
| Q |
568 |
taattatttccc |
579 |
Q |
| |
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|| |||||||| |
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| T |
42376782 |
caactatttccc |
42376771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 159 - 471
Target Start/End: Complemental strand, 42387539 - 42387228
Alignment:
| Q |
159 |
gtttgtatgaacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgag |
258 |
Q |
| |
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|||| |||||||| ||||||||| | ||||||||||||||||||||||| || ||||||||| ||| ||| |||| ||| |||| |||| ||||||||| |
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| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgag |
42387441 |
T |
|
| Q |
259 |
gaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaa |
358 |
Q |
| |
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|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42387440 |
gaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaa |
42387341 |
T |
|
| Q |
359 |
acccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
458 |
Q |
| |
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|||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| | |
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| T |
42387340 |
acccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtct |
42387241 |
T |
|
| Q |
459 |
ttgtgaacgtttg |
471 |
Q |
| |
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|| | |||||||| |
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| T |
42387240 |
ttatcaacgtttg |
42387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 42387220 - 42387167
Alignment:
| Q |
526 |
aaggttcttggatggtaaatgggattataaagggaatgactttaattatttccc |
579 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttccc |
42387167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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