View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19960_low_3 (Length: 596)

Name: NF19960_low_3
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19960_low_3
NF19960_low_3
[»] chr1 (1 HSPs)
chr1 (17-591)||(34055094-34055668)
[»] chr3 (11 HSPs)
chr3 (17-192)||(47382691-47382866)
chr3 (427-527)||(47381252-47381351)
chr3 (244-431)||(47381702-47381872)
chr3 (427-523)||(47816721-47816816)
chr3 (20-192)||(45115640-45115812)
chr3 (261-348)||(47817261-47817348)
chr3 (429-509)||(45113354-45113434)
chr3 (525-581)||(47381173-47381229)
chr3 (367-431)||(47817195-47817259)
chr3 (525-587)||(47816634-47816694)
chr3 (237-334)||(45114470-45114569)
[»] chr8 (3 HSPs)
chr8 (17-192)||(40245405-40245580)
chr8 (429-527)||(40243962-40244059)
chr8 (216-400)||(40244398-40244582)


Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Original strand, 34055094 - 34055668
Alignment:
Q  17 aagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34055094 aagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaacttcctcagtcagttgaccacccttggtataaccag 34055193  T
Q  117 catatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcatagaatggtagatgaacaatagaca 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055194 catatgcatgaagtgagccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcatagaatggtagatgaacaatagaca 34055293  T
Q  217 agaactgctggtccggagatggtagataaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggc 316  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34055294 agaactgctggtccggagatggtagataaacaatacatgtgcctgttgaagttgaactcgagaaccagcttcggcattcaaatctatagctttgtcaggc 34055393  T
Q  317 aaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055394 aaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgat 34055493  T
Q  417 tcattcatattcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagtt 516  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34055494 tcattcatattcacagttggctttggcactttcactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagtgtt 34055593  T
Q  517 gtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttcgttc 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055594 gtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttcgttc 34055668  T

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Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 47382866 - 47382691
Alignment:
Q  17 aagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccag 116  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||     
T  47382866 aagacatcaggatgggctttctcaatctcatcaaagagtacaacagtatagggacggcgccgaactgcctcagtcaattgaccaccctcggtataaccaa 47382767  T
Q  117 catatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcat 192  Q
    ||||| || || ||||||||||||||||||||||||||   |||||||||||||| ||||||||||||| ||||||    
T  47382766 catatccaggaggtgaaccgatgagtttggagactgtgtgccgttccataaattcgctcatgtcaagccgaatcat 47382691  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 427 - 527
Target Start/End: Complemental strand, 47381351 - 47381252
Alignment:
Q  427 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctccta 526  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  47381351 tcacagttggctctggcactttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcat-ctagtgttgtggctccta 47381253  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 244 - 431
Target Start/End: Complemental strand, 47381872 - 47381702
Alignment:
Q  244 aaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataa 343  Q
    |||||||||  |||| ||||||||| ||||||| ||| |||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47381872 aaacaatacctgtgcatgttgaagtcgaactcgggaaccagcttcatcaatcaaatctatagctttgtcaggcaaaaatcgatcactgcagaagacataa 47381773  T
Q  344 ttattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 431  Q
    |||||                  |||||||||||||||||| ||||||||||||||||   ||||| |||||||||||||||||||||    
T  47381772 ttatt-----------------attaagataaacagcaggtggaaaacaacaagatacagggtacagtttgattcattcatattcaca 47381702  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 427 - 523
Target Start/End: Complemental strand, 47816816 - 47816721
Alignment:
Q  427 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctc 523  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  47816816 tcacagttggctctagcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc 47816721  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 45115812 - 45115640
Alignment:
Q  20 acatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccagcat 119  Q
    |||||| |||| |||||||| |||||||||||| ||||||||||||| ||||| || | |||||| |||||||  |||||||| | ||| |||||| |||    
T  45115812 acatcaggatgagctttctcgatctcatcaaagagtacaacagtgtaaggacgacgacgaactgcttcagtcaactgaccaccttcggtgtaaccaacat 45115713  T
Q  120 atgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcat 192  Q
    || || || ||||||| || ||||||||||| |||   | ||||||||| |||||||||||||| | ||||||    
T  45115712 atccaggaggtgaaccaataagtttggagacagtgtgcctttccataaactcactcatgtcaagacgaatcat 45115640  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 261 - 348
Target Start/End: Complemental strand, 47817348 - 47817261
Alignment:
Q  261 gttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattatt 348  Q
    |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47817348 gttgaagtcgaactcgggaaccagcttcgtcaatcaaatctatagctttgtcaggcaaaaatcgaccactgcagaagacataattatt 47817261  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 429 - 509
Target Start/End: Complemental strand, 45113434 - 45113354
Alignment:
Q  429 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcc 509  Q
    |||||||| | ||| |||||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||    
T  45113434 acagttggttctggtactttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatcc 45113354  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 525 - 581
Target Start/End: Complemental strand, 47381229 - 47381173
Alignment:
Q  525 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat 581  Q
    ||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||    
T  47381229 tatttacttaagagatgaaagttgtggcaaattcagcatatgcacaaccatatatat 47381173  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 47817259 - 47817195
Alignment:
Q  367 ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 431  Q
    |||||||||||||||||| ||||||||||||||||   ||||| ||| |||||||||||||||||    
T  47817259 ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttaattcattcatattcaca 47817195  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 587
Target Start/End: Complemental strand, 47816694 - 47816634
Alignment:
Q  525 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttc 587  Q
    |||||||||||||||||||| |||||||||| | |||||||  | | ||||||||||||||||    
T  47816694 tatttacttaagagatggaagttgtggcaagctgagcatat--acagccatatatatgtcttc 47816634  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 45114569 - 45114470
Alignment:
Q  237 ggtagataaacaatacac--gtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcag 334  Q
    |||||| |||||||| ||  |||| ||||||||  | ||||| ||| |||||||  || ||||||| || |||||||| ||||||||| |||||||||||    
T  45114569 ggtagacaaacaatatacctgtgcatgttgaagacggactcgtgaaccagcttcatcaatcaaatcaatggctttgtcgggcaaaaatcgatcactgcag 45114470  T

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Target: chr8 (Bit Score: 96; Significance: 9e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 40245580 - 40245405
Alignment:
Q  17 aagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccag 116  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||  |||||||||     
T  40245580 aagacatcaggatgggctttctcaatctcatcaaagagtacaaccgtgtagggacgacgccgaactgcctcagtcagttgaccaccctcagtataaccaa 40245481  T
Q  117 catatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcat 192  Q
    ||||| |  || ||||||| ||||||||||||||||||   | |||||| ||||||||||||||||| | ||||||    
T  40245480 catatcctggaggtgaaccaatgagtttggagactgtgtgcctttccatgaattcactcatgtcaagacgaatcat 40245405  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 429 - 527
Target Start/End: Complemental strand, 40244059 - 40243962
Alignment:
Q  429 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctat 527  Q
    |||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40244059 acagttggctctggcactttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcat-ctagagttgtggctcctat 40243962  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 216 - 400
Target Start/End: Complemental strand, 40244582 - 40244398
Alignment:
Q  216 aagaactgctggtccggagat-ggtagataaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcag 314  Q
    ||||||||||||| | | ||| ||| ||| ||||||||  |||| ||||||||| | ||||| ||| |||||||  || |||||||||||||||||||||    
T  40244582 aagaactgctggttcagggattggtggatgaacaatacctgtgcatgttgaagtcggactcgggaaccagcttcatcaatcaaatctatagctttgtcag 40244483  T
Q  315 gcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagata 400  Q
    |||||||| |||| ||||| ||| ||||||||||||||||  ||||||| |||| | |||||||||| |||||| | |||||||||    
T  40244482 gcaaaaatcgatcgctgcaaaagtcataattattttatgagtgagaaaacacttga-ataaacagcaagtagaagataacaagata 40244398  T

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