View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19960_low_5 (Length: 448)

Name: NF19960_low_5
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19960_low_5
NF19960_low_5
[»] chr7 (16 HSPs)
chr7 (1-368)||(15672070-15672434)
chr7 (2-250)||(15680284-15680528)
chr7 (1-249)||(15666784-15667035)
chr7 (1-135)||(16022935-16023069)
chr7 (20-135)||(14603464-14603579)
chr7 (20-116)||(16170724-16170820)
chr7 (20-109)||(16101053-16101142)
chr7 (375-448)||(37405525-37405598)
chr7 (4-128)||(17847124-17847248)
chr7 (409-448)||(4895667-4895706)
chr7 (409-448)||(28124697-28124736)
chr7 (409-448)||(28126524-28126563)
chr7 (409-448)||(44963246-44963285)
chr7 (409-447)||(20046605-20046643)
chr7 (375-415)||(21631305-21631345)
chr7 (375-415)||(34844169-34844209)
[»] scaffold0289 (1 HSPs)
scaffold0289 (1-250)||(19652-19907)
[»] chr6 (9 HSPs)
chr6 (375-448)||(15868475-15868548)
chr6 (375-448)||(15866663-15866736)
chr6 (375-448)||(33866182-33866255)
chr6 (375-448)||(33869329-33869402)
chr6 (409-448)||(1088762-1088801)
chr6 (409-448)||(19645409-19645448)
chr6 (409-447)||(5376962-5377000)
chr6 (409-447)||(5378817-5378855)
chr6 (375-416)||(24544733-24544774)
[»] chr1 (7 HSPs)
chr1 (375-448)||(3284585-3284658)
chr1 (375-448)||(9310495-9310568)
chr1 (375-448)||(9312112-9312185)
chr1 (375-448)||(3282884-3282957)
chr1 (375-445)||(902162-902232)
chr1 (409-448)||(17449394-17449433)
chr1 (40-112)||(14534755-14534827)
[»] scaffold0251 (1 HSPs)
scaffold0251 (375-448)||(6309-6382)
[»] chr5 (1 HSPs)
chr5 (375-448)||(39787134-39787207)
[»] chr4 (7 HSPs)
chr4 (399-448)||(3529246-3529295)
chr4 (409-448)||(7040444-7040483)
chr4 (409-448)||(23564784-23564823)
chr4 (409-448)||(23566458-23566497)
chr4 (409-448)||(52520684-52520723)
chr4 (409-448)||(54296511-54296550)
chr4 (399-448)||(23985857-23985906)
[»] chr8 (3 HSPs)
chr8 (409-448)||(30224313-30224352)
chr8 (409-448)||(6428823-6428862)
chr8 (409-448)||(25249089-25249128)
[»] chr2 (3 HSPs)
chr2 (409-448)||(29758203-29758242)
chr2 (375-415)||(20957557-20957597)
chr2 (375-415)||(20957729-20957769)
[»] scaffold0057 (1 HSPs)
scaffold0057 (409-448)||(58869-58908)
[»] chr3 (2 HSPs)
chr3 (409-448)||(1140084-1140123)
chr3 (409-447)||(17402891-17402929)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 15672070 - 15672434
Alignment:
Q  1 ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac 100  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15672070 ggaatcttcatcacacgtaattcccaaccagttgcatgaaatattgtcattccatgaagataacaaagcttggctttggttatcaagacttgctttccac 15672169  T
Q  101 ttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaagggttgttagttatga 200  Q
    |||||||| ||||||| |||||||||||||||||| ||||||| ||||| |||||||  |||||||||||||||||||||||       |||||||||||    
T  15672170 ttcaacaacgcacttgcttctctactttgtaaagtagaagaagcagatgaaattgtt--ggaaaaaccaacaattgaagaagg------gttagttatga 15672261  T
Q  201 gtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatgacttgcagcattggaaatatggacaccatggaagctatagggtgatgg-- 298  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||   || ||| ||||||||||||||||||||||||||||||||||| ||      
T  15672262 gtggacaaaagtacattgagaaaaacagccaaaagagtacacacttcatggtctgaagcgttggaaatatggacaccatggaagctatagggtgagggct 15672361  T
Q  299 -----cttaagatactttgttatgattggaagcaatatgtagttagtagcgttgcacatatttattggaaaccaa 368  Q
         ||||||||||||| || ||||||||  | ||||||| ||||||| |||||| |||||||| |||||||||    
T  15672362 tagcacttaagatactttattttgattgga--ctatatgtaattagtagtgttgcagatatttataggaaaccaa 15672434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 15680284 - 15680528
Alignment:
Q  2 gaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccact 101  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15680284 gaatcttcatcacacgtgattccgaaccagctgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagacttgctttccact 15680383  T
Q  102 tcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaagggttgttagttatgag 201  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |   ||||||    
T  15680384 tcaacaaagcacttgcttctctactttgtaaagtggaagaagtagatgaaattgttagggaaaaaccaacaattgaagaagaagggttcat---tatgag 15680480  T
Q  202 tggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatg 250  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  15680481 tggacaaaagtacattgagaaaaacagccaaaa-agtacacacttcatg 15680528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15666784 - 15667035
Alignment:
Q  1 ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  15666784 ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaaacttggctttggttgtcaagacttgctttccac 15666883  T
Q  101 ttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaag-----ggttgttagt 195  Q
    |||||||||||||||| |||| | ||||| | |||||| ||||  |  | ||| || | |||| ||||||| |  ||||||||||     ||  ||||||    
T  15666884 ttcaacaaagcacttgcttctttgctttgaacagtggatgaagctgcagaaatagtaaaggaagaaccaaccacagaagaagaagaagaagg--gttagt 15666981  T
Q  196 tatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcat 249  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15666982 tatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcat 15667035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 16023069 - 16022935
Alignment:
Q  1 ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac 100  Q
    ||||||||||| ||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||    
T  16023069 ggaatcttcattacaagaaattccaagccagttgcatgaattattgccactccatgaagataacaaagcttggctatggttgtcaagacttgttttccac 16022970  T
Q  101 ttcaacaaagcacttgtttctctactttgtaaagt 135  Q
    |||| ||||||||||| ||||||||||||||||||    
T  16022969 ttcagcaaagcacttgcttctctactttgtaaagt 16022935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 14603579 - 14603464
Alignment:
Q  20 attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaagcacttgttt 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||   ||||||||||||||||||||||| ||    
T  14603579 attccaagccagttgcatgaattattgccactccatgaagataacaaagcttggctatggttgtcaagacttattttccacttcaacaaagcacttgctt 14603480  T
Q  120 ctctactttgtaaagt 135  Q
    ||||||||||||||||    
T  14603479 ctctactttgtaaagt 14603464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 16170820 - 16170724
Alignment:
Q  20 attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaagcacttg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||||||||    
T  16170820 attccaagccagttgcatgaattattgccactccatgaagatagcaaagtttggctatggttgtcaagacttgctttccacttcaacaaagcacttg 16170724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 16101142 - 16101053
Alignment:
Q  20 attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||||    
T  16101142 attccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttgattgtcaaggcttgctttccacatcaacaaa 16101053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 448
Target Start/End: Original strand, 37405525 - 37405598
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  37405525 atagtgactcataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatag 37405598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 17847248 - 17847124
Alignment:
Q  4 atcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttc 103  Q
    |||||||||||| || ||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||   | |||||  |   |||||| |||    
T  17847248 atcttcatcacatgtaattcccatccagttgcatgaattgttgccattccatgaagataacaaagcttggctttctatttcaaggttgcttttccatttc 17847149  T
Q  104 aacaaagcacttgtttctctacttt 128  Q
    ||||||| ||||| |||||||||||    
T  17847148 aacaaagaacttgcttctctacttt 17847124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 4895706 - 4895667
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  4895706 aaaagatgatgaatgagtacaatagtgttcctatatatag 4895667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 28124697 - 28124736
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  28124697 aaaagatgatgaatgagtacaatagtgttcctatatatag 28124736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 28126524 - 28126563
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  28126524 aaaagatgatgaatgagtacaatagtgttcctatatatag 28126563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 44963285 - 44963246
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  44963285 aaaagatgatgaatgagtacaatagtgttcctatatatag 44963246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 20046605 - 20046643
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatata 447  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  20046605 aaaagatattgaatgagtacaatagtgttcctatatata 20046643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 21631305 - 21631345
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagat 415  Q
    ||||| ||||||||||||||||||||||||| | |||||||    
T  21631305 atagtgactcatagtagagtaaactagatttgataaaagat 21631345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 34844209 - 34844169
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagat 415  Q
    ||||| ||||||||||||||||||||||||| | |||||||    
T  34844209 atagtgactcatagtagagtaaactagatttgataaaagat 34844169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 19652 - 19907
Alignment:
Q  1 ggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccac 100  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||| ||| |||||    
T  19652 ggaatcttcaccacatgtgattccaaaccagttgcatgagttattgccactccatgaagatagcaaagtttggctttggttgtcaagacttgctatccac 19751  T
Q  101 ttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaag--------ggttgtt 192  Q
    |||||||||||||||| |||| | ||||| | |||||| ||||  |  | ||| || | |||| ||||||  |  ||||||||||        ||  |||    
T  19752 ttcaacaaagcacttgcttctttgctttgaacagtggatgaagctgcagaaatagtaaaggaagaaccaaacacagaagaagaagaagaagaagg--gtt 19849  T
Q  193 agttatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatg 250  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  19850 agttatgagtgtacaaaagtacattgaggaaaacagccaaaagtgtacacacttcatg 19907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 15868548 - 15868475
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15868548 atagtgactcataggagagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatag 15868475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 15866736 - 15866663
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  15866736 atagtgactcataggagagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctaaatatag 15866663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 33866255 - 33866182
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| || ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  33866255 atagtgacccataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatag 33866182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 33869402 - 33869329
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  33869402 atagtgactcataggagagtaaactagatttaacaaaagatagtgaatgcgtacaatagtgttcctatatatag 33869329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 1088762 - 1088801
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  1088762 aaaagatgatgaatgagtacaatagtgttcctatatatag 1088801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 19645409 - 19645448
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  19645409 aaaagataatgaatgagtacaatagtgttcttatatatag 19645448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 5377000 - 5376962
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatata 447  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  5377000 aaaagatattgaatgagtacaatagtgttcctatatata 5376962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 5378855 - 5378817
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatata 447  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  5378855 aaaagatattgaatgagtacaatagtgttcctatatata 5378817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 24544774 - 24544733
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagata 416  Q
    |||| |||||||||||||||||||||||||| | ||||||||    
T  24544774 atagaaactcatagtagagtaaactagatttgataaaagata 24544733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 3284658 - 3284585
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  3284658 atagtgactcataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatag 3284585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 9310568 - 9310495
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9310568 atagtgactcataggagagtaaattagatttaacaaaagataatgaatgagtacaatagtgttcctatatatag 9310495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 9312185 - 9312112
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9312185 atagtgactcatgggagagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatag 9312112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 3282957 - 3282884
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  3282957 atagtgacttataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatag 3282884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 445
Target Start/End: Complemental strand, 902232 - 902162
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatata 445  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||   |||||  ||||||||||||||    
T  902232 atagtgactcataggagagtaaactagatttaacaaaagataatgaaatgatacatgagtgttcctatata 902162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 17449433 - 17449394
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  17449433 aaaagataatgaatgagtacaatagtgttcctatatatag 17449394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 14534755 - 14534827
Alignment:
Q  40 attattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaagca 112  Q
    |||||||||| |||||||||| | |||||| | ||| ||||| ||||| || |||||||||||||||| ||||    
T  14534755 attattgccaatccatgaagagagcaaagcattgctatggttgtcaaggcttgctttccacttcaacagagca 14534827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 6382 - 6309
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| |||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  6382 atagtgactcataggagagtaaacttgatttaacaaaagatagtgaatgagtacaatagtgttcctatatatag 6309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 375 - 448
Target Start/End: Original strand, 39787134 - 39787207
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||| ||| |||| ||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||    
T  39787134 atagtgacttataggagagtaaactagatttaacaaaagacagtgaatgagtaaaatagtgttcctatatatag 39787207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 3529246 - 3529295
Alignment:
Q  399 tagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||||||    
T  3529246 tagatttgataaaagataatgaatgagtacaatagtgttcctatatatag 3529295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 7040483 - 7040444
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  7040483 aaaagataatgaatgagtacaatagtgttcctatatatag 7040444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 23564784 - 23564823
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  23564784 aaaagataatgaatgagtacaatagtgttcctatatatag 23564823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 23566458 - 23566497
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  23566458 aaaagataatgaatgagtacaatagtgttcctatatatag 23566497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 52520723 - 52520684
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  52520723 aaaagatgatgaatgagtacaatagtgttcctatatatag 52520684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 54296550 - 54296511
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  54296550 aaaagatcatgaatgagtacaatagtgttcctatatatag 54296511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 23985906 - 23985857
Alignment:
Q  399 tagatttaacaaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| | |||||||  ||||||| |||||||||||||||||||||||    
T  23985906 tagatttgataaaagatggtgaatgagtacaatagtgttcctatatatag 23985857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 30224352 - 30224313
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  30224352 aaaagataatgaatgagtacaatagtgttcctatatatag 30224313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 6428862 - 6428823
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  6428862 aaaagatgatgaatgattacaatagtgttcctatatatag 6428823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 25249128 - 25249089
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  25249128 aaaagatcatgaatgagtacaatagtgttcctatatatag 25249089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 29758242 - 29758203
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29758242 aaaagataatgaatgagtacaatagtgttcctatatatag 29758203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 20957597 - 20957557
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagat 415  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  20957597 atagtgactcatagtagagtaaactagatttgacaaaagat 20957557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 20957769 - 20957729
Alignment:
Q  375 atagtaactcatagtagagtaaactagatttaacaaaagat 415  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  20957769 atagtgactcatagtagagtaaactagatttgacaaaagat 20957729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 58908 - 58869
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  58908 aaaagatgatgaatgagtacaatagtgttcctatatatag 58869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 1140123 - 1140084
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatatag 448  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  1140123 aaaagatgatgaatgagtacaatagtgttcctatatatag 1140084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 17402891 - 17402929
Alignment:
Q  409 aaaagataatgaatgaatacaatagtgttcctatatata 447  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  17402891 aaaagatattgaatgagtacaatagtgttcctatatata 17402929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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