View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19960_low_6 (Length: 404)
Name: NF19960_low_6
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19960_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 46763936 - 46763559
Alignment:
| Q |
13 |
aatatgtcattcgataaagcagttaagggttaaatatattttagtcgctatcaaatttacannnnnnnnnngttttagtccctgtaacaacttttcagtc |
112 |
Q |
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| T |
46763936 |
aatatgtcattcgataaagcagttaagggttaaatatattttagtcgctatcaaatttacattttttttttgttttagtccctgtaccaacttttcagtc |
46763837 |
T |
|
| Q |
113 |
ctacaaatcacaaaaccttatacttgtagtccctccttagagactaaaatcatgcagttttgtaatttgtagagactcagaagtgtgagtagggactaaa |
212 |
Q |
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| T |
46763836 |
ctacaaatcacaaaaccttatacttgtagtccctctttagagactaaaatcatgcagttttgtaatttgtagagactcagaagtgtgagtagggactaaa |
46763737 |
T |
|
| Q |
213 |
agcagaatttgagataattatatgaactaaaaacatatttaacggaacaattattgccaatttcgggagaagactataaatgtcgtcaagcaacaattct |
312 |
Q |
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| T |
46763736 |
agcagaatttgagataattatatgaactaaaaacatatttaaccgaacaattattgccaatttcgggagaagactataaatgtcgtcaagcaacaattct |
46763637 |
T |
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| Q |
313 |
tacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatctt |
390 |
Q |
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| T |
46763636 |
tacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatctt |
46763559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 28315234 - 28315283
Alignment:
| Q |
206 |
gactaaaagcagaatttgagataattatatgaactaaaaacatatttaac |
255 |
Q |
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| T |
28315234 |
gactaaaagcaaaatttgatatatttatatggactaaaaacatttttaac |
28315283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 1084013 - 1083936
Alignment:
| Q |
313 |
tacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatctt |
390 |
Q |
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||||||||||||||||| || || || ||||||| ||||||||||| | || ||||||||||| || ||||||||| |
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| T |
1084013 |
tacccaagaacataaatatctgcaggcggtgaggcgtgaagccaatcgtttatgctcaaattactcggcggggatctt |
1083936 |
T |
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