View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19960_low_7 (Length: 392)
Name: NF19960_low_7
Description: NF19960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19960_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 42394243 - 42393879
Alignment:
| Q |
18 |
attactaatatgatgtggggtgcggcgatggaggacggagagagggagagcttaggagcggagtttaggaagacagcagcggagatggtgcagctcatag |
117 |
Q |
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| T |
42394243 |
attactaatatgatgtggggtgcggcgatggaggacggtgagagggagagcttaggagcggaatttaggaagacagcagcagagatggtgcagctcatag |
42394144 |
T |
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| Q |
118 |
ggaagccgaacttgtcggannnnnnnccttcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaat |
217 |
Q |
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| T |
42394143 |
ggaagccgaacttgtcagatttttttcctgcgctggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaat |
42394044 |
T |
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| Q |
218 |
atttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggaaagtgaaagtaaggannnnnnnnnnnnnnngttgaatttgaaggaggaa |
317 |
Q |
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| T |
42394043 |
atttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaa |
42393944 |
T |
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| Q |
318 |
ggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
382 |
Q |
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| T |
42393943 |
ggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
42393879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 42378328 - 42378104
Alignment:
| Q |
18 |
attactaatatgatgtggggtgcggcgatggaggacggagagagggagagcttaggagcggagtttaggaagacagcagcggagatggtgcagctcatag |
117 |
Q |
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| T |
42378328 |
attacgaatatgatgtggggtgcgggggtggaaggagaagagagggagagtttaggggcggagtttagggaggcggtggcggagatggtgcagctattgg |
42378229 |
T |
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| Q |
118 |
ggaagccgaacttgtcggannnnnnnccttcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaat |
217 |
Q |
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| T |
42378228 |
ggaagccgaatttgtcggatttttttcctgggttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatgggat |
42378129 |
T |
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| Q |
218 |
atttgaaaagatgattggtgaacga |
242 |
Q |
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| T |
42378128 |
atttgagaagatgattggtgaacga |
42378104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 42378044 - 42377961
Alignment:
| Q |
299 |
gttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
382 |
Q |
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| T |
42378044 |
gttgaatttgaaggaggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttg |
42377961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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