View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19961_high_10 (Length: 342)
Name: NF19961_high_10
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 46170129 - 46169821
Alignment:
| Q |
19 |
atctctcaaaaagcaaaacaaatcaacggttccatcatgaacaaattatattaacccataccctagcatacctataatatttttattatactttttagaa |
118 |
Q |
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| T |
46170129 |
atctctcaaaaagcaaaacaaatcaacggttccatcatgaacaaattatattaacccataccctagcatacctataatatttttattatactttttagaa |
46170030 |
T |
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| Q |
119 |
ttaataataataattcatgttaatcacaatgcaggtatctgaacactggtgatccaaaagggacagattggctaccagcagaatgtgatgtttcaattcg |
218 |
Q |
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| T |
46170029 |
ttaataataataattcatgttaatcacaatgcaggtatctgaacactggtgatccaaaagggacagattggctaccagcagaatgtgatgtttcaattcg |
46169930 |
T |
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| Q |
219 |
tccaggatggttttggcataaatcagaatcaccnnnnnnnctaagtgacctacttgacatttattacaaatctgttggaagaaattgtgtgttacttctt |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46169929 |
tccaggatggttttggcataaatcagaatcaccaaaaaaactaagtgacctacttgacatttattacaaatctgttggaagaaattgtgtgttacttctt |
46169830 |
T |
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| Q |
319 |
aatgtacct |
327 |
Q |
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||||||||| |
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| T |
46169829 |
aatgtacct |
46169821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 46185674 - 46185580
Alignment:
| Q |
191 |
taccagcagaatgtgatgtttcaattcgtccaggatggttttggcataaatcagaatcaccnnnnnnnctaagtgacctacttgacatttattac |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
46185674 |
taccagcagaatgtgatgtttcaattcgtccaggatggttttggcataaatcagaatcaccaaataaactaagtgacctacttgatatttattac |
46185580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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