View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19961_high_14 (Length: 296)
Name: NF19961_high_14
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 42975646 - 42975364
Alignment:
| Q |
1 |
ggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatattaaatttaaccgataact |
100 |
Q |
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| T |
42975646 |
ggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatattaagtttaaccgataact |
42975547 |
T |
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| Q |
101 |
gggggaaaaactatacgcggaaaatttcagaagaattttttcttatatgaaatcaaaaattaaaacttcactaagataataagaaagttcttt---nnnn |
197 |
Q |
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| T |
42975546 |
gggggaaaaactatacgcggaaaatttcagaagaattttttcttatattaaatcgaaaattaaaacttcactaagataataagagagttctttaaaaaaa |
42975447 |
T |
|
| Q |
198 |
nnnnctatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttgactttgtaacaaacaaactaac |
280 |
Q |
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| T |
42975446 |
aaaactatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttgactttgtaacaaacaaactaac |
42975364 |
T |
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