View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19961_high_4 (Length: 507)
Name: NF19961_high_4
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Original strand, 36804668 - 36805149
Alignment:
| Q |
19 |
caaaatgggtatccaagatgtatgtatccacaccccattactcattgaatttccaaaggattcaaaagaaacattcaggatctaccctttcatcatacaa |
118 |
Q |
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| T |
36804668 |
caaaatgggtatccaagatgtatgtatccacaccccattactcattgaatttccaaaggattcaaaagaaacattcaggatctaccctttcatcatacaa |
36804767 |
T |
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| Q |
119 |
ggtgtatatataataatatgaacgaatattttgttcaataattgtcttcttatacatgtgattttgattttgtgcacacctagctaatggtaattaatgt |
218 |
Q |
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| T |
36804768 |
ggtgtatatataataatatgaacgaatattttgttcaataattgtcttcttatacatgtgattttgattttgtgcacacctagctaatggtaattaatgt |
36804867 |
T |
|
| Q |
219 |
ttgattaatannnnnnnnnnnnnnnnnnnnacatataggaggatgagggaagatataagccaatggcatacaatggagaattgaatttaggtaacaaatt |
318 |
Q |
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| T |
36804868 |
ttgattaatactttgttttgttgtttttgtacatataggaggatgagggaagatataagccaatggcatacaatggagaattgaatttaggtaacaaatt |
36804967 |
T |
|
| Q |
319 |
gcctataagaagatcaatgcaagaagatagaaatttggagaaggtagaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttaagaacc |
418 |
Q |
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| T |
36804968 |
gcctataagaagatcaatgcaagaagatagaaatttggagaaggtagaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttaagaaca |
36805067 |
T |
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| Q |
419 |
aatgacaccgtactagtactacctcttgaggactctcatgattttgttccacaaggagacatttacagaaatgcctttgctt |
500 |
Q |
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| T |
36805068 |
aatgacaccgtactagcactacctcttgaggactctcatgattttgttccacaaggagacatttacagaaatgcctttgctt |
36805149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 36516563 - 36516077
Alignment:
| Q |
19 |
caaaatgggtatccaagatgtatgtatccacaccccattactcattgaatttccaaaggattcaaaagaaacattcaggatctaccctttcatcatacaa |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36516563 |
caaaatgggtatccaagatgtattcatccacaccccattactcattgaattatcaaagggttcaaaagaaacattcaggatctaccctttcatcatacaa |
36516464 |
T |
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| Q |
119 |
ggtgtatatataataatatgaacgaatattttgttcaataattgtcttctt--------------atacatgtgattttgattttgtgcaca-cctagct |
203 |
Q |
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| T |
36516463 |
ggtgtatatataatag-----atgaatactttgtccaataattgtctttttttcttctttcccacatacatgtgattttgattttgtgcacaacctagct |
36516369 |
T |
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| Q |
204 |
a-atggtaattaatgtttgattaatannnnnnnnnnnnnnnnnnnnacatataggaggatgagggaagatataagccaatggcatacaatggagaattga |
302 |
Q |
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| ||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
36516368 |
atatgttaattaatgtttgattaatattttgttttgatgtttttgtacatgtaggaggatgagggaagatataattcaatggccaacaatggagaattga |
36516269 |
T |
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| Q |
303 |
atttaggtaacaaattgcctataagaagatcaatgcaagaagatagaaatttggagaaggtagaaggaagtcttgcaaaagcaagagcattgataaaaca |
402 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36516268 |
atttagataacaaattgcctataagaagatcaatgcaaggagataaaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcattgataaaaca |
36516169 |
T |
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| Q |
403 |
agccttgttaagaaccaatgacaccgtactagtactacctcttgaggactctcatgattttgttccacaaggagacatttacagaaatgcctttgctt |
500 |
Q |
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||||||||| ||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
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| T |
36516168 |
agccttgttgagaaccaatgacacc------gtagtgcctcttgaggactctcatgattatgttccacaaggacacatctacagaaatgcctttgctt |
36516077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 293 - 433
Target Start/End: Complemental strand, 36538601 - 36538462
Alignment:
| Q |
293 |
ggagaattgaatttaggtaacaaattgcctataagaagatcaatgcaagaagatagaaatttggagaaggtagaaggaagtcttgcaaaagcaagagcat |
392 |
Q |
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|||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36538601 |
ggagaattgattttagttaacaaattgcccataagaagatcaatgcaaggagatagaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcat |
36538502 |
T |
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| Q |
393 |
tgataaaacaagccttgttaagaaccaatgacaccgtacta |
433 |
Q |
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| T |
36538501 |
tgataaaacaagcctt-atgagaaccaatgacactgtacta |
36538462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 440 - 500
Target Start/End: Complemental strand, 36520382 - 36520322
Alignment:
| Q |
440 |
cctcttgaggactctcatgattttgttccacaaggagacatttacagaaatgcctttgctt |
500 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
36520382 |
cctcttgaggactctcatgattatgttccacaaggagacatctacagaaatgcatttgctt |
36520322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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