View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19961_high_7 (Length: 429)

Name: NF19961_high_7
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19961_high_7
NF19961_high_7
[»] chr7 (13 HSPs)
chr7 (17-266)||(36221990-36222234)
chr7 (53-266)||(36217999-36218207)
chr7 (50-260)||(35938799-35939004)
chr7 (49-240)||(32727038-32727224)
chr7 (49-257)||(35976915-35977118)
chr7 (49-257)||(35998327-35998530)
chr7 (331-412)||(36221845-36221926)
chr7 (53-260)||(35981485-35981687)
chr7 (53-260)||(36002897-36003099)
chr7 (49-172)||(35957460-35957583)
chr7 (68-240)||(35946271-35946438)
chr7 (67-257)||(35951909-35952094)
chr7 (332-412)||(36217854-36217934)
[»] chr1 (2 HSPs)
chr1 (52-257)||(18125183-18125383)
chr1 (52-181)||(18117530-18117659)
[»] chr2 (1 HSPs)
chr2 (49-153)||(26329140-26329244)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 36222234 - 36221990
Alignment:
Q  17 cacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222234 cacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagc 36222135  T
Q  117 ttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaatttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  36222134 ttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttat-----ttaaatcaaatttt 36222040  T
Q  217 gagaatagagaacttcctaatgttttgacagccagcggaactccagcaca 266  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||    
T  36222039 gataacagagaacttcctaatgttttgacagccagcggaactccagcaca 36221990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 53 - 266
Target Start/End: Complemental strand, 36218207 - 36217999
Alignment:
Q  53 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 152  Q
    ||||||||||||||||||||| |||||||||| || |||| ||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |    
T  36218207 tctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcatctttcttct 36218108  T
Q  153 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 252  Q
    ||||||| ||||| ||||||||||||||||| |||| ||||||     || |||||||||||||||||| |||||||||||||  ||| | |||||||||    
T  36218107 gttctaaattccatatctcatggtctcttacaaataaccactt-----atctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagc 36218013  T
Q  253 ggaactccagcaca 266  Q
    ||||||||||||||    
T  36218012 ggaactccagcaca 36217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 260
Target Start/End: Original strand, 35938799 - 35939004
Alignment:
Q  50 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 149  Q
    |||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||    
T  35938799 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatcatagcttaattttagtgcaggtaaaatatcattttgct 35938898  T
Q  150 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagcc 249  Q
    | |||||||| ||||| ||||||   |||||||| |||  ||||||     |||||||||||||||||| || |||||||||||||||||||| ||||||    
T  35938899 tctgttctaaattccatatctcagaatctcttacaaattcccactt-----atttaaatcaaattttgaaaacagagaacttcctaatgttttcacagcc 35938993  T
Q  250 agcggaactcc 260  Q
    || ||||||||    
T  35938994 agtggaactcc 35939004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 49 - 240
Target Start/End: Original strand, 32727038 - 32727224
Alignment:
Q  49 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 148  Q
    ||||||||||||||| | ||||||  |||||||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||    
T  32727038 ataatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttc 32727137  T
Q  149 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 240  Q
    || |||||||| ||||| ||||||   ||||| || |||||||||||     |||||||||| ||||||||||||  ||||||| |||||||    
T  32727138 ttctgttctaaattccatatctcagaatctctcacaaatatccactt-----atttaaatcatattttgagaataaggaacttcgtaatgtt 32727224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 35976915 - 35977118
Alignment:
Q  49 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 148  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35976915 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35977014  T
Q  149 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 248  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35977015 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35977109  T
Q  249 cagcggaac 257  Q
     ||||||||    
T  35977110 tagcggaac 35977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 35998327 - 35998530
Alignment:
Q  49 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 148  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35998327 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35998426  T
Q  149 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 248  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35998427 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35998521  T
Q  249 cagcggaac 257  Q
     ||||||||    
T  35998522 tagcggaac 35998530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 36221926 - 36221845
Alignment:
Q  331 aaatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatg 412  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  36221926 aaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatatacgaaggaacagtactcatcatg 36221845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 260
Target Start/End: Original strand, 35981485 - 35981687
Alignment:
Q  53 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 152  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  153 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 252  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  35981585 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 35981679  T
Q  253 ggaactcc 260  Q
    ||||||||    
T  35981680 ggaactcc 35981687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 260
Target Start/End: Original strand, 36002897 - 36003099
Alignment:
Q  53 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 152  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  153 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 252  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  36002997 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 36003091  T
Q  253 ggaactcc 260  Q
    ||||||||    
T  36003092 ggaactcc 36003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 35957460 - 35957583
Alignment:
Q  49 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 148  Q
    ||||||||||||||| | |||||||||||||||||| || |||| ||| |||||||||| |||||| ||||||||||  |||||||||||||||    ||    
T  35957460 ataatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatc 35957559  T
Q  149 ttttgttctaagttccaaatctca 172  Q
    ||||||||||| ||||| ||||||    
T  35957560 ttttgttctaaattccacatctca 35957583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 35946271 - 35946438
Alignment:
Q  68 gaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaa 167  Q
    ||||||||||||||||| || || | ||| |||||||||| |||||| ||||||||||  |||||||| |||||| |||||||||||||||| ||||| |    
T  35946271 gaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgttctaaattccaca 35946370  T
Q  168 tctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 240  Q
    |||||  ||| || ||||||  ||||||     | ||| |||||| |||||||| ||||||||| ||||||||    
T  35946371 tctcagagtccctaacgaattcccactt-----acttatatcaaagtttgagaagagagaacttgctaatgtt 35946438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 257
Target Start/End: Original strand, 35951909 - 35952094
Alignment:
Q  67 ggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaa 166  Q
    ||||||| | |||| |||||| || | |||||||| ||||| ||||||||||||||| |  ||||||||||||||| |||||| ||||||||| ||||||    
T  35951909 ggaaaaagaggcaatacaatgtcttagataggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaa 35952008  T
Q  167 atctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac 257  Q
    ||  ||  |||||| || |||  ||||||     | ||||||| || |||||||| || |||||||| |||| ||| |||||||| |||||    
T  35952009 atagcagagtctctgacaaattcccactt-----acttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaac 35952094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 36217934 - 36217854
Alignment:
Q  332 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatg 412  Q
    ||||||||||||||||||| | ||||| |   ||||  ||||||||||||||||| ||||||||||||| |||||||||||    
T  36217934 aatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatg 36217854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 52 - 257
Target Start/End: Original strand, 18125183 - 18125383
Alignment:
Q  52 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttt 151  Q
    |||||| ||||| | ||| ||||||||||| || ||||| ||||||||||||||||  |||||||| ||||||| |||||||||||||||| |||| |      
T  18125183 atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc 18125282  T
Q  152 tgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccag 251  Q
    |||| ||| ||||| | ||||   |||||||| ||||||||     |  |||||||||||||||||||||||| ||||||||||||||| | ||||| ||    
T  18125283 tgttttaaattccacagctcagaatctcttacaaatatcca-----tgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctag 18125377  T
Q  252 cggaac 257  Q
     |||||    
T  18125378 tggaac 18125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 18117530 - 18117659
Alignment:
Q  52 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttt 151  Q
    ||||||||||||||  | ||  |||||||| || ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||||    
T  18117530 atctttgggatacatagcaatgtaagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttt 18117629  T
Q  152 tgttctaagttccaaatctcatggtctctt 181  Q
    ||||||||  |||| ||||||  |||||||    
T  18117630 tgttctaaagtccacatctcagagtctctt 18117659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 26329244 - 26329140
Alignment:
Q  49 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 148  Q
    ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |   |||||||||||||| ||||     
T  26329244 ataatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcatctttg 26329145  T
Q  149 ttttg 153  Q
    |||||    
T  26329144 ttttg 26329140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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