View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19961_high_9 (Length: 370)
Name: NF19961_high_9
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 10245191 - 10245535
Alignment:
| Q |
10 |
atgaactttgtgttgtactcgaagaaatctaccacacaatttgaatgaatatattacttttagtcaaaataaattaaaataaagaatgtaaattttcaaa |
109 |
Q |
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| T |
10245191 |
atgaactttgtgttgtactcgaagaaatctaccacacaatttgaatgaatatattacttttagtcaaaataaattaaaataaagaatgtaaaatttcaaa |
10245290 |
T |
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| Q |
110 |
ctcacataaaaagaatgaatttacaatctttaaaacacgaatatttaatccttaaaactaacacctctcttacatttattttgtttacgtacctttattt |
209 |
Q |
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| T |
10245291 |
ctcacataaaaagaatgaatttacaatctttaaaacacaaatatttaatccttaaaactaacacctctcttacatttattttgtttacgtacctttattt |
10245390 |
T |
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| Q |
210 |
tgttttcaaatacttatatttagttgaattccttcattatactctttttaatgaaattttctgaacaaaataaaattgtgttactcagtcactcaaataa |
309 |
Q |
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| T |
10245391 |
tgttttcaaatacttatatttagttgaattccttcattatactctttttaatg-aattttctgaacaaaataaaattgtgttactcagtcactcaaatta |
10245489 |
T |
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| Q |
310 |
gagtggatagagcaatgaaaatatttattactatgtagtttatagt |
355 |
Q |
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| T |
10245490 |
gagtggatagagcaatgaaaatatttattactatgtagtttatagt |
10245535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 10245004 - 10245179
Alignment:
| Q |
10 |
atgaactttgtgttgtactcgaagaaatctaccacacaatttgaatgaatatattacttttagtcaaaataaattaaaataaagaatgtaaattttcaa- |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10245004 |
atgaaatttgtgttgtactcgaagaaatctaccacacgatttgaatgaatatattacttttagtcaaaataaattaaaataaagaatgtaacatttcaaa |
10245103 |
T |
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| Q |
109 |
---actcacataaaaagaatgaatttacaatctttaaaacacgaatatttaatccttaaaactaacacctctctta |
181 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
10245104 |
ctcactcacatataaagaatgaatttacaatctttaaaacacaaatatttaatccttaaatctaacacctctctta |
10245179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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